4RV1 | pdb_00004rv1

Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium (NESG) Target OR497.

PDB DOI: https://doi.org/10.2210/pdb4RV1/pdb

Classification: DE NOVO PROTEIN
Organism(s): synthetic construct
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-11-24 Released: 2014-12-10
Deposition Author(s): Vorobiev, S., Parmeggiani, F., Seetharaman, J., Xiao, R., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.57 Å
R-Value Free:
0.237 (Depositor), 0.244 (DCC)
R-Value Work:
0.201 (Depositor), 0.211 (DCC)
R-Value Observed:
0.203 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 4RV1

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Engineered Protein OR497.

Vorobiev, S., Parmeggiani, F., Seetharaman, J., Xiao, R., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 257.62 kDa
Atom Count: 18,115
Modeled Residue Count: 2,477
Deposited Residue Count: 2,520
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Engineered Protein OR497	A, B, C, D, E A, B, C, D, E, F	420	synthetic construct	Mutation(s): 0 Gene Names: ARTIFICIAL GENE

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACT Query on ACT Download:Ideal Coordinates CCD File SDF format, chain H [auth C] SDF format, chain G [auth A] MOL2 format, chain H [auth C] MOL2 format, chain G [auth A] mmCIF format, chain H [auth C] mmCIF format, chain G [auth A]	G [auth A], H [auth C]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain G [auth A] Focus chain H [auth C] Interactions & Density Focus chain G [auth A] Focus chain H [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.57 Å
R-Value Free: 0.237 (Depositor), 0.244 (DCC)
R-Value Work: 0.201 (Depositor), 0.211 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.265	α = 90
b = 99.265	β = 90
c = 432.183	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
BALBES	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-12-10

Deposition Author(s):

Parmeggiani, F.

Seetharaman, J.

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2014-12-10
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.