4RUV

Crystal structure of thioredoxin 2 from Staphylococcus aureus NCTC8325


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.170 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Elucidation of the mechanism of disulfide exchange between staphylococcal thioredoxin2 and thioredoxin reductase2: a structural insight.

Bose, M.Bhattacharyya, S.Biswas, R.Roychowdhury, A.Bhattacharjee, A.Ghosh, A.K.Das, A.K.

(2019) Biochimie --: --

  • DOI: 10.1016/j.biochi.2019.01.019
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The redox homeostasis of cytoplasm is maintained by a series of disulfide exchange reactions mediated by proteins belonging to the thioredoxin superfamily. Thioredoxin and thioredoxin reductase, being the major members of the family, play a key role ...

    The redox homeostasis of cytoplasm is maintained by a series of disulfide exchange reactions mediated by proteins belonging to the thioredoxin superfamily. Thioredoxin and thioredoxin reductase, being the major members of the family, play a key role in oxidative stress response of Staphylococcus aureus. In this report, we have identified and characterised an active thioredoxin system of the mentioned pathogen. Crystal structure of thioredoxin2 (SaTrx2) in its reduced form reveals that it contains the conserved redox active WCXXC motif and a thioredoxin fold. Thioredoxin reductase2 (SaTR2) is a flavoprotein and consists of two Rossmann folds as the binding sites for FAD and NADPH. Crystal structure of the SaTR2 holoenzyme shows that the protein consists of two domains and the catalytic site comprises of an intramolecular disulfide bond formed between two sequentially distal cysteine residues. Biophysical and biochemical studies unveil that SaTrx2 and SaTR2 can physically interact in solution and in the course of sustaining the redox equilibrium, the latter reduces the former. Molecular docking has been performed to illustrate the interface formed between SaTrx2 and SaTR2 during the disulfide exchange reaction.


    Organizational Affiliation

    Institut für Medizinische und Pharmazeutische Chemie, Technische Universität Braunschweig, Braunschweig, Germany.,Division of Life Science, State Key Laboratory of Molecular Neuroscience, Hong Kong University of Science and Technology, Hong Kong, China.,the Norwegian College of Fisheries Science, Arctic University of Norway, N-9037 Tromsø, Norway, and.,Department of Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China; Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China; Beijing Key Laboratory of Tumor Systems Biology, Peking University Health Science Center, Beijing 100191, China.,Key Laboratory of Animal Epidemiology of the Ministry of Agriculture, Haidian District, Beijing, China.,Instituto de Estructura de la Materia, Consejo Superior de Investigaciones Científicas IEM-CSIC, Serrano 121, E-28006 Madrid, Spain.,Laboratório de Espectrometria de Massa, Embrapa Recursos Genéticos e Biotecnologia, Brasília, Distrito Federal, Brazil. Electronic address: carlos.bloch@embrapa.br.,Department of Molecular and Systems Biology and Norris Cotton Cancer Center , Geisel School of Medicine at Dartmouth , 1 Medical Centre Drive HB7936 , Lebanon , New Hampshire 03756 , United States.,Biocenter Oulu and Faculty of Biochemistry and Molecular Medicine, University of Oulu, PO Box 5400, FI-90014 Oulu, Finland.,Center of Pharmaceutical Engeneering (PVZ), Technische Universität Braunschweig, Braunschweig, Germany.,Department of Biology, Washington University in St. Louis, One Brookings Drive, Campus Box 1137, St. Louis, MO, 63130, USA.,School of Life Sciences, KNU Creative BioResearch Group, Kyungpook National University, Daegu, 41566, Republic of Korea. kkim@knu.ac.kr.,Collaborative Innovation Center of New Drug Research and Safety Evaluation, Zhengzhou University, Zhengzhou 450001, China.,Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.,Department of Neurology, Amsterdam Neuroscience, Academic Medical Center, Meidreefberg 9, 1105, AZ, Amsterdam, the Netherlands.,Biomarker Discovery, Novartis Institute for BioMedical Research, Basel, Switzerland.,Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.,RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan.,College of Chemistry and Molecular Engineering, Zhengzhou University, Zhengzhou 450001, China.,Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India. Electronic address: amitk@bt.iitkgp.ac.in.,ManRos Therapeutics, Hôtel de Recherche, Centre de Perharidy, Roscoff, France.,Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada.,EMD Serono Research & Development Institute, Inc., 45A Middlesex Turnpike, Billerica 01821, MA, USA. Electronic address: hui.qiu@emdserono.com.,RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan. kurumizaka@iam.u-tokyo.ac.jp shunichi.sekine@riken.jp.,Janssen Neuroscience Discovery, Janssen Pharmaceutical Companies of Johnson & Johnson, Turnhoutseweg 30, 2340, Beerse, Belgium.,Department of Pharmaceutical Science, General and Organic Chemistry Section, University of Milano, 20133 Italy.,Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada. jwhitney@mcmaster.ca.,Tetramer Core, BRI at Virginia Mason, Seattle, WA, USA.,Translational Research Program, BRI at Virginia Mason, Seattle, WA, USA.,School of Life Sciences, KNU Creative BioResearch Group, Kyungpook National University, Daegu, 41566, Republic of Korea.,Clean Energy Research Center, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea. smlee@kist.re.kr.,Department of Biology and Chemistry Laboratory of Biomolecular Research, Paul Scherrer Institut (PSI), 5232 Villigen, Switzerland.,Department of Chemistry , University of Florence , Via della Lastruccia 3 , 50019 Sesto Fiorentino, Florence , Italy.,Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China. kuangty@ibcas.ac.cn.,Chemical and Physical Biology, Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain.,Molecular Biophysics and Integrated Bioimaging, Berkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.,Structural Biology Group, European Synchrotron Radiation Facility, CS 40220, F-38043, Grenoble, France. christoph.mueller_dieckmann@esrf.fr.,Center for Integrated Protein Science at the Department Chemistry, Chair of Biochemistry, Technical University of Munich, Lichtenbergstr. 4, 85748, Garching, Germany. michael.groll@tum.de.,Pfizer Structural Biology and Biophysics, Groton, Eastern Point Road, Groton, CT 06340, USA.,Laboratoire de Microbiologie, Université libre de Bruxelles (ULB), 6041 Gosselies, Belgium.,Ben May Department for Cancer Research, University of Chicago, Chicago, IL, 60637, USA. sfanning@uchicago.edu.,Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany. stefan.raunser@mpi-dortmund.mpg.de.,Faculty of Science, University of Zurich, Zurich, 8057, Switzerland.,Present address: Janssen R&D US, 3210 Merryfield Row, San Diego, CA, 92121, USA.,Janssen Vaccines and Prevention, Janssen Pharmaceutical Companies of Johnson and Johnson, Archimedesweg 6, Leiden, CN, 2333, the Netherlands.,Department of Dermatology and Allergy Biederstein, Technical University of Munich, Biedersteiner Str. 29, 80802, Munich, Germany.,Astex Pharmaceuticals , 436 Cambridge Science Park , Cambridge , CB4 0QA , UK . Email: honorine.lebraud@astx.com ; Email: tom.heightman@astx.com.,Pohang Accelerator Laboratory, Pohang University of Science and Technology, Pohang, Republic of Korea ygkim76@postech.ac.kr.,Focus Group "Clinical Cell Processing and Purification", Institute for Advanced Study, Technical University of Munich, 81675, Munich, Germany. dirk.busch@tum.de.,Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.,Hefei National Laboratory for Physical Sciences at Microscale,CAS Key Laboratory of Brain Function and Disease, Neurodegenerative Disorder Research Center, School of Life Sciences, University of Science and Technology of China, Hefei, China.,Chair of Experimental Genetics, Center of Life and Food Sciences Weihenstephan, Technical University of Munich, 85354, Freising, Weihenstephan, Germany.,Institute for Medical Microbiology, Immunology and Hygiene, Technical University of Munich, Trogerstr. 30, 81675, Munich, Germany. dirk.busch@tum.de.,Department of Structural Biology, Weizmann Institute of Science, Rehovot, 7610001, Israel.,Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, 77030, USA. vprasad@bcm.edu.,German Center for Infection Research (DZIF), Trogerstr. 30, 81675, Munich, Germany. dirk.busch@tum.de.,Biomedical Research Institute, Korea Institute of Science and Technology, Seoul, 02792, Republic of Korea.,Howard Hughes Medical Institute, Seattle, WA, USA.,Institute of Pathology, Helmholtz Zentrum München, Ingolstädter Landstr. 1, 85764, Neuherberg, Germany.,Université de Lorraine, INRA, IAM, Nancy, France. eric.gelhaye@univ-lorraine.fr.,Department of Chemistry, University of Duisburg-Essen, Universitätsstr. 7, 45117, Essen, Germany.,Department of Physiology and Biophysics, School of Medicine, Case Western Reserve University, Cleveland, OH, 44106, USA.,Department of Oncology-Pathology , Karolinska Institute , CCK R8:01 , Karolinska Hospital , 171 76 Stockholm , Sweden.,University Clinic of Visceral Surgery and Medicine, Departement Klinische Forschung, University of Bern, Murtenstr. 35, CH-3010, Bern, Switzerland.,Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, QC, H3C 3J7, Canada. john.pascal@umontreal.ca.,High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Center, Mumbai 400 085, India.,International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.,Departments of Chemistry, Immunology, Chemistry Modeling and Informatics, In Vitro Pharmacology, Target Protein Design and Structural Chemistry, Merck & Co., Inc., 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, United States.,Translational Medicine, Novartis Institute for BioMedical Research, Basel, Switzerland.,Graduate School of Innovative Life Science , University of Toyama , 2630 Sugitani , Toyama 930-0194 , Japan.,Institute for Interdisciplinary Science, Okayama University, Okayama, Japan.,Nova Southeastern University Cell Therapy Institute, Dr. Kiran C. Patel College of Allopathic Medicine, Nova Southeastern University, Fort Lauderdale, FL 33301.,Department of Chemistry, Syracuse University, Syracuse, NY, 13244, USA.,Department of Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China; Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China; Beijing Key Laboratory of Tumor Systems Biology, Peking University Health Science Center, Beijing 100191, China. Electronic address: yunch@hsc.pku.edu.cn.,Arietis Pharma, Boston, Massachusetts, USA m.lafleur@arietiscorp.com.,Department of Biochemistry and Molecular Biology and the Center for Blood Research, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, V6T 1Z3, Canada. ncjs@mail.ubc.ca.,the Department of Biosciences, University of Oslo, P.O. Box 1066, Blindern, N-0316 Oslo, Norway.,Constellation Pharmaceuticals, 215 First Street, Suite 200, Cambridge, MA 02142, USA.,Janssen Prevention Center, Janssen Pharmaceutical Companies of Johnson & Johnson, Archimedesweg 6, 2333, CN, Leiden, the Netherlands. AApetri@its.jnj.com.,Laboratory of Chromatin Structure and Function, Institute for Quantitative Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.,Department of Chemistry, University of Eastern Finland, PO Box 111, 80101 Joensuu, Finland.,Janssen Prevention Center, Janssen Pharmaceutical Companies of Johnson & Johnson, 3210 Merryfield Row, San Diego, CA, 92121, USA.,Musculoskeletal Diseases, Novartis Institute for BioMedical Research, Basel, Switzerland.,European Synchrotron Radiation Facility, Structural Biology Group, 71 Avenue des Martyrs, F-38000, Grenoble, France.,Computational Biochemistry, Zentrum für Medizinische Biotechnologie, Fakultät für Biologie, Universität Duisburg-Essen, Universitätsstr. 2, 45117, Essen, Germany.,Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104-6059, USA.,KNU Institute for Microorganisms, Kyungpook National University, Daegu, 41566, Republic of Korea.,Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.,Université de Lorraine, CNRS, CRM2, Nancy, France. claude.didierjean@univ-lorraine.fr.,Institute for Medical Microbiology, Immunology and Hygiene, Technical University of Munich, Trogerstr. 30, 81675, Munich, Germany.,Department of Cell Biochemistry, University of Groningen, Groningen 9747 AG, Netherlands.,DISFARM, Dipartimento di Scienze Farmaceutiche, Sezione Chimica Generale e Organica, Università degli Studi, Milano, Italy.,Michael DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada. jwhitney@mcmaster.ca.,Structural Biology Brussels, Vrije Universiteit Brussel, 1050 Brussels, Belgium.,Institute of Biochemistry, ETH Zurich, 8093, Zurich, Switzerland.,EMD Serono Research & Development Institute, Inc., 45A Middlesex Turnpike, Billerica 01821, MA, USA.,Biochemistry, Cellular, and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996, USA.,Institute for Pharmaceutical Chemistry, Structural Genomics Consortium and Buchmann Institute for Molecular Life Sciences, Johann Wolfgang Goethe-University, Frankfurt am Main, Germany.,State Key Laboratory of Membrane Biology, Beijing Advanced Innovation Center for Structural Biology, School of Life Sciences, Tsinghua University, Beijing, China.,LOEWE Center for Synthetic Microbiology (Synmikro), Philipps University Marburg, Marburg, Germany.,Department of Life Sciences and Chemistry, Jacobs University Bremen, 28759 Bremen, Germany.,Pfizer Neuroscience and Pain Research Unit, Granta Park, Great Abington, Cambridge CB21 6GS, UK.,Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.,Abteilung Physikalische Biochemie, Max-Planck-Institut für molekulare Physiologie, Dortmund, Germany.,Institute for Advanced Study, Hong Kong University of Science and Technology, Hong Kong, China.,Instituto de Química, Universidade de Brasília (UnB), Brasília, Distrito Federal, Brazil; Departamento de Áreas Acadêmicas, Instituto Federal de Educação, Ciência e Tecnologia e Goiás (IFG), Luziânia, Goiás, Brazil.,Rheumatology Unit, Department of Medicine Solna, Center for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden. Electronic address: Vivianne.malmstrom@ki.se.,Global Drug Development, Novartis, Basel, Switzerland.,State Key Laboratory of Bioorganic and Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai, 200032, China.,Department of Infection and Immunity, Luxembourg Institute of Health, 29 rue Henri Koch, L-4354, Esch-sur-Alzette, Luxembourg.,Department of Biochemistry and Molecular Biology and the Center for Blood Research, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, V6T 1Z3, Canada.,From the Department of Cell and Molecular Biology, Uppsala University, Box 596, S-751 24 Uppsala, Sweden.,Max Planck Institute for Evolutionary Anthropology, D-04103, Leipzig, Germany.,Brain Science Institute, Korea Institute of Science and Technology, Seoul, 02792, Republic of Korea; Department of Neuroscience, Korea University of Science and Technology, Daejeon, Republic of Korea; Department of Neuroscience, College of Veterinary Medicine, Research Institute for Veterinary Science, and BK21 PLUS Program for Creative Veterinary Science Research, Seoul National University, Seoul, 08826, Republic of Korea.,German Center for Infection Research (DZIF), Trogerstr. 30, 81675, Munich, Germany.,Pohang Accelerator Laboratory, Pohang University of Science and Technology, Pohang, Republic of Korea.,Laboratory of Chemical Biology and Institute of, Complex Molecular Systems, Department of Biomedical Engineering, Eindhoven University of Technology, Den Dolech 2, 5612, AZ, Eindhoven, The Netherlands.,Pfizer Structural Biology and Biophysics, Groton, Eastern Point Road, Groton, CT 06340, USA. Electronic address: shenping.liu@pfizer.com.,Preclinical Safety, Novartis Institute for BioMedical Research, Basel, Switzerland.,Magnetic Resonance Center CERM , University of Florence , Via Luigi Sacconi 6 , 50019 Sesto Fiorentino, Florence , Italy.,Molecular and Cellular Pharmacology, Discovery Sciences, Janssen Pharmaceutical Companies of Johnson & Johnson, Turnhoutseweg 30, 2340, Beerse, Belgium.,Neuroscience, Novartis Institute for BioMedical Research, Basel, Switzerland.,Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.,Science for Life Laboratory Department of Theoretical Physics, KTH Royal Institute of Technology, SE-100 44, Stockholm, Sweden.,Laboratoire de Physiologie Cellulaire & Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRA, BIG, Grenoble, USA. chloe.zubieta@cea.fr.,University Chemical Laboratory, University of Cambridge, Cambridge CB2 1EW, U.K.,Rheumatology Unit, Department of Medicine Solna, Center for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden; Science for Life Laboratory, Department of Medicine Solna, Karolinska Institutet, Sweden; Department of Infectious Diseases, Karolinska University Hospital, Stockholm, Sweden.,European Synchrotron Radiation Facility, Structural Biology Group, 71 Avenue des Martyrs, F-38000, Grenoble, France. max.nanao@esrf.fr.,Neuroscience, Novartis Institute for BioMedical Research, Basel, Switzerland ulf.neumann@novartis.com cristina.lopez_lopez@novartis.com.,Department of Medicine, Baylor College of Medicine, Houston, TX, 77030, USA.,Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.,Institut Pasteur, Unité de Microbiologie Structurale, CNRS UMR 3528 & Université Paris Diderot, 25 rue du Dr. Roux, 75724 Paris CEDEX 15, France. Electronic address: ariel.mechaly@pasteur.fr.,Science for Life Laboratory, Department of Medicine Solna, Karolinska Institute, and Division of Infectious Diseases, Karolinska University Hospital, Solna, SE-17176 Stockholm, Sweden.,Chemical Biology and Therapeutics, Novartis Institute for BioMedical Research, Basel, Switzerland.,Laboratory for Microbiology, Department of Biology, Philipps-University Marburg, Marburg, Germany.,Institute of Medical Microbiology, University of Zurich, 8006, Zurich, Switzerland. vpanse@imm.uzh.ch.,Institut Pasteur, Plate-forme de Cristallographie, CNRS UMR 3528, 25 rue du Dr. Roux, 75724 Paris CEDEX 15, France.,Department of Microbiology and Immunology, College of Veterinary Medicine, China Agricultural University, Beijing, China.,Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany.,Shenzhen Key Laboratory for Neuronal Structural Biology, Biomedical Research Institute, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center, Shenzhen, China.,German Center for Diabetes Research (DZD), Ingostädter Landstr. 1, 85764, Neuherberg, Germany.,Institut de Recherches Microbiologiques Jean-Marie Wiame - Labiris, 1070 Brussels, Belgium.,Gorlaeus Laboratories , Leiden Institute of Chemistry and Netherlands Proteomics Centre , Einsteinweg 55 , 2333 CC Leiden , Netherlands.,Ruhr University Bochum, Faculty of Biology and Biotechnology, Department of Biophysics, Protein Crystallography, Universitätsstr. 150, 44780 Bochum, Germany.,Área de Farmacología, Departamento de Ciencias Biomédicas, Universidad de Alcalá, Unidad Asociada al IQM (CSIC), Alcalá de Henares, E-28871 Madrid, Spain.,Department of Biochemistry, School of Medicine, Case Western Reserve University, Cleveland, OH, 44106, USA.,F. Hoffmann-La Roche AG, Konzern-Hauptsitz, Grenzacherstrasse 124, CH-4070 Basel, Switzerland.,Institute of Molecular Biology & Biophysics, ETH Zurich, 8093, Zurich, Switzerland. allain@mol.biol.ethz.ch.,Department of Pathology, Amsterdam Neuroscience, VU University Medical Center, De Boelelaan 1117, 1081, HV, Amsterdam, the Netherlands.,Institute for Computational Molecular Science College of Science and Technology, Temple University, 1925 N 12th St, Philadelphia, PA 19122.,Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.,Biomedical Research Institute, Korea Institute of Science and Technology, Seoul, 02792, Republic of Korea. Electronic address: eunice@kist.re.kr.,College of Life Sciences, Peking University, Beijing 100871, China.,Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, QC, H3C 3J7, Canada.,Biocenter Oulu and Faculty of Biochemistry and Molecular Medicine, University of Oulu, PO Box 5400, FI-90014 Oulu, Finland rik.wierenga@oulu.fi.,School of Biological Sciences, Seoul National University, Seoul, Republic of Korea.,German Mouse Clinic, Institute of Experimental Genetics, Helmholtz Zentrum München, Ingolstädter Landstr. 1, 85764, Neuherberg, Germany.,VIB-VUB Center For Structural Biology, 1050 Brussels, Belgium.,Division of Immunology, Department of Biology, University of Konstanz, Universitaetsstr. 10, 78457, Konstanz, Germany.,Department of Biochemistry and the Emory Comprehensive Glycomics Core, Emory University School of Medicine, Atlanta, GA, 30322, USA.,Max Planck Institute for Terrestrial Microbiology, Marburg, Germany. lennart.randau@mpi-marburg.mpg.de.,Department of Dermatology and Allergy Center, Odense Research Center for Anaphylaxis, University of Southern Denmark, DK-5000, Odense C, Denmark.,KNU Institute for Microorganisms, Kyungpook National University, Daegu, 41566, Republic of Korea. kkim@knu.ac.kr.,Institute of Biochemistry, University of Cologne, 50674 Koeln, Germany.,Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea.,Olema Pharmaceuticals, San Francisco, CA, 94107, USA. leslie@olemapharma.com.,Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.,Institute of Human Genetics, Technical University of Munich, 81675, Munich, Germany.,Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104-6059, USA. blackbe@pennmedicine.upenn.edu.,Center for Integrated Protein Science at the Department Chemie, Lehrstuhl für Biochemie , Technische Universität München , 85748 Garching , Germany.,Hefei National Laboratory for Physical Sciences at the Microscale and School of Life Sciences, University of Science and Technology of China, Hefei Anhui, China.,Department of Pharmacology, Baylor College of Medicine, Houston, TX, 77030, USA.,Harvard Medical School, 300 Longwood Ave, Boston, MA 02115.,Department of Chemistry, University of Pennsylvania, 231 S 34th St, Philadelphia, PA 19104.,Departamento de Química, Universidade Federal de São Carlos (UFSCar), São Carlos, São Paulo, Brazil.,Instituto de Química, Universidade de Brasília (UnB), Brasília, Distrito Federal, Brazil; Instituto de Biociências, Universidade Federal do Estado do Rio de Janeiro (UNIRIO), Rio de Janeiro, Rio de Janeiro, Brazil.,Institute of Molecular Biology & Biophysics, ETH Zurich, 8093, Zurich, Switzerland.,Division of Structural Biology, Department of Pharmaceutical Sciences, School of Pharmacy, Iwate Medical University, Yahaba, Japan.,Department of Plant Science, Rothamsted Research, Harpenden, Herts AL5 2JQ, United Kingdom.,Department of Epidemiology, Harvard T.H. Chan School of Public Health, 677 Huntington Avenue, Boston, MA, 02115, USA.,Janssen Prevention Center, Janssen Pharmaceutical Companies of Johnson & Johnson, Archimedesweg 6, 2333, CN, Leiden, the Netherlands.,Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.,Olema Pharmaceuticals, San Francisco, CA, 94107, USA.,Key Laboratory for Insect-Pollinator Biology of the Ministry of Agriculture, Institute of Apiculture, Chinese Academy of Agricultural Sciences, Beijing, China.,Pfizer Worldwide Medicinal Chemistry, Neuroscience and Pain Research Unit, Granta Park, Great Abington, Cambridge CB21 6GS, UK.,Ruhr University Bochum, Fakultät für Medizin, Institute for Biochemistry and Pathobiochemistry, Microbial Biochemistry, Universitätsstr. 150, 44780 Bochum, Germany.,Structural Biology Group, European Synchrotron Radiation Facility, CS 40220, F-38043, Grenoble, France.,Science for Life Laboratory, Department of Medicine Solna, Karolinska Institute, and Division of Infectious Diseases, Karolinska University Hospital, Solna, SE-17176 Stockholm, Sweden; adnane.achour@ki.se.,Pohang Accelerator Laboratory, Pohang University of Science and Technology, Pohang, Kyungbuk, 37673, Republic of Korea.,Takeda California, Inc. , 10410 Science Center Drive , San Diego , California 92121 , United States.,Department of Pediatrics, Graduate School of Medicine, Gifu University, Yanagido 1-1, Gifu 501-1194, Japan.,Global Discovery Chemistry, Novartis Institute for BioMedical Research, Basel, Switzerland.,Ben May Department for Cancer Research, University of Chicago, Chicago, IL, 60637, USA.,Department of Biochemistry, School of Medicine, Case Western Reserve University, Cleveland, OH, 44106, USA. qinj@ccf.org.,Center for Integrated Protein Science at the Department Chemistry, Chair of Biochemistry, Technical University of Munich, Lichtenbergstr. 4, 85748, Garching, Germany.,Department of Molecular Cardiology, Lerner Research Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA. qinj@ccf.org.,Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland.,Institute of Human Genetics, Helmholtz Zentrum München, Ingolstädter Landstr. 1, 85764, Neuherberg, Germany.,Department of Neuroscience, College of Veterinary Medicine, Research Institute for Veterinary Science, and BK21 PLUS Program for Creative Veterinary Science Research, Seoul National University, Seoul, 08826, Republic of Korea. Electronic address: ehur1@snu.ac.kr.,Department of Molecular Cardiology, Lerner Research Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA.,Rheumatology Unit, Department of Medicine Solna, Center for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden.,Laboratory of Chromatin Structure and Function, Institute for Quantitative Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan. kurumizaka@iam.u-tokyo.ac.jp shunichi.sekine@riken.jp.,Department of Chemistry, Université de Montréal, Montréal, QC, H3C 3J7, Canada.,Department of Biology, York University, Toronto, Ontario M3J 1P3, Canada.,Department of Protein Science, School of Engineering Sciences in Chemistry, Biotechnology and Health, AlbaNova University Center, Royal Institute of Technology, SE-10691 Stockholm, Sweden.,Science for Life Laboratory, Department of Medicine Solna, Karolinska Institutet, Sweden; Department of Infectious Diseases, Karolinska University Hospital, Stockholm, Sweden.,Université de Lorraine, INRA, IAM, Nancy, France.,Department of Microbiology, School of Dentistry, Aichi Gakuin University, Nagoya, Japan.,Faculty of Chemistry, Philipps-University-Marburg, Marburg, Germany.,Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China.,State Key Laboratory of Membrane Biology, Beijing Advanced Innovation Center for Structural Biology, School of Life Sciences, Tsinghua University, Beijing, China. suisf@mail.tsinghua.edu.cn.,Institute of Medical Microbiology, University of Zurich, 8006, Zurich, Switzerland.,Max-Planck Institute for Plant Breeding Research, 50829 Cologne, Germany.,Proteros Biostructures GmbH, Bunsenstraße 7a, 82152, Planegg, Germany.,Pfizer Worldwide Research & Development , 610 Main Street, Cambridge, Massachusetts 02139, United States.,Pfizer Neuroscience and Pain Research Unit, Granta Park, Great Abington, Cambridge CB21 6GS, UK. Electronic address: gareth.8.young@gsk.com.,Bioanalytics Research Group, Department of Clinical Chemistry, University Medical Centre, Göttingen, Germany.,Institute of Molecular Systems Biology, ETH Zurich, 8093, Zurich, Switzerland.,LOEWE Center for Synthetic Microbiology (Synmikro), Philipps University Marburg, Marburg, Germany. lennart.randau@mpi-marburg.mpg.de.,Department of Biochemistry, University of Zurich, 8057, Zurich, Switzerland.,Theodor Boveri Institute of Biosciences (Biocenter), University of Würzburg, Am Hubland, D-97074 Würzburg, Germany.,Department of Biotechnology and Bioinformatics, North-Eastern Hill University, Shillong, 793022, India.,Department of Microbiology and Immunology, College of Veterinary Medicine, China Agricultural University, Beijing, China zhangnianzhi@cau.edu.cn xiachun@cau.edu.cn.,Chemical Biology, Zentrum für Medizinische Biotechnologie, Fakultät für Biologie, Universität Duisburg-Essen, Universitätsstr. 2, 45117, Essen, Germany.,Graduate School of Advanced Science and Engineering, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo 162-8480, Japan.,Institut de Biologie Moleculaire et Cellulaire, Centre National de la Recherche Scientifique, Strasbourg, France.,Convergence Research Center for Diagnosis, Treatment and Care System of Dementia, Korea Institute of Science and Technology, Seoul, Republic of Korea.,From the Department of Cell and Molecular Biology, Uppsala University, Box 596, S-751 24 Uppsala, Sweden, inger.andersson@icm.uu.se.,Institut Pasteur de Montevideo, Laboratory of Molecular and Structural Microbiology, Mataojo 2002, Montevideo 11400, Uruguay; Institut Pasteur, Departement de Microbiologie, 25-28 rue du Dr. Roux, 75724 Paris CEDEX 15, France.,Department of Microbiology, University of Washington, Seattle, WA, USA.,Global Drug Development, Novartis, Basel, Switzerland ulf.neumann@novartis.com cristina.lopez_lopez@novartis.com.,Neuroscience Drug Discovery Unit, Research , Takeda Pharmaceutical Company Limited , 26-1, Muraoka-Higashi 2-chome, Fujisawa , Kanagawa 251-8555 , Japan.,Université de Lorraine, LERMAB, Nancy, France.,Michael DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada.,Institute for Molecular Animal Breeding and Biotechnology, Gene Center of the Ludwig-Maximilians-Universität München, Feodor-Lynen Str. 25, 81377, Munich, Germany.,Institut Pasteur, Unité de Microbiologie Structurale, CNRS UMR 3528 & Université Paris Diderot, 25 rue du Dr. Roux, 75724 Paris CEDEX 15, France.,Laboratoire de Physiologie Cellulaire & Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRA, BIG, Grenoble, USA.,Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA. vprasad@bcm.edu.,Discipline of Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Indore 453 552, India.,Structural Genomics Consortium, Nuffield Department of Medicine, Oxford University, Oxford, United Kingdom.,The Francis Crick Institute, London, NW1 1AT, United Kingdom.,Arietis Pharma, Boston, Massachusetts, USA.,Department of Hematology and Oncology , Kantonsspital St. Gallen , 9007 St. Gallen , Switzerland.,Department of Biochemical Sciences A.Rossi-Fanelli, University of Rome La Sapienza, Rome, Italy.,Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, 77030, USA.,PK Sciences, Novartis Institute for BioMedical Research, Basel, Switzerland.,Research & Development, Pharmaceuticals , Bayer AG , 13353 Berlin , Germany.,Department of Medical Sciences, Rheumatology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.,Université de Lorraine, CNRS, CRM2, Nancy, France.,Faculty of Pharmaceutical Sciences , University of Toyama , 2630 Sugitani , Toyama 930-0914 , Japan.,Institut Pasteur, Unité de Microbiologie Structurale, CNRS UMR 3528 & Université Paris Diderot, 25 rue du Dr. Roux, 75724 Paris CEDEX 15, France. Electronic address: pedro.alzari@pasteur.fr.,Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.,Laboratório de Espectrometria de Massa, Embrapa Recursos Genéticos e Biotecnologia, Brasília, Distrito Federal, Brazil.,School of Biological Science and Technology, University of Jinan, Jinan, China.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thioredoxin
A
114Staphylococcus aureus (strain NCTC 8325)Mutation(s): 0 
Find proteins for Q2G000 (Staphylococcus aureus (strain NCTC 8325))
Go to UniProtKB:  Q2G000
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.170 
  • Space Group: P 41
Unit Cell:
Length (Å)Angle (°)
a = 31.376α = 90.00
b = 31.376β = 90.00
c = 94.804γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
XDSdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing
StructureStudiodata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-12-09
    Type: Initial release
  • Version 1.1: 2019-02-13
    Type: Data collection, Database references