4ROU | pdb_00004rou

Auto-inhibition Mechanism of Human Mitochondrial RNase P Protein Complex

• PDB DOI: https://doi.org/10.2210/pdb4ROU/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2014-10-29 Released: 2015-11-04 
• Deposition Author(s): Li, F., Liu, X., Yang, X., Shen, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.71 Å
• R-Value Free: 
  0.278 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.238 (Depositor), 0.250 (DCC) 
• R-Value Observed: 
  0.240 (Depositor) 

Literature

Auto-inhibition Mechanism of Human Mitochondrial RNase P Protein Complex

Li, F., Liu, X., Yang, X., Shen, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 3 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 72.49 kDa 
• Atom Count: 3,898 
• Modeled Residue Count: 502 
• Deposited Residue Count: 620 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial ribonuclease P protein 3	A [auth B], B [auth A]	310	Homo sapiens	Mutation(s): 0  EC: 3.1.26.5
UniProt & NIH Common Fund Data Resources
Find proteins for O15091 (Homo sapiens) Explore O15091  Go to UniProtKB:  O15091
PHAROS:  O15091 GTEx:  ENSG00000100890

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	C [auth B], E [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
CL	D [auth B], F [auth A], G [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.71 Å
• R-Value Free:  0.278 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.238 (Depositor), 0.250 (DCC) 
• R-Value Observed: 0.240 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.434	α = 90
b = 78.287	β = 90
c = 114.187	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASES	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-11-04 
Deposition Author(s): Li, F., Liu, X., Yang, X., Shen, Y.

Revision History  

• Version 1.0: 2015-11-04
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references, Derived calculations