4RM7 | pdb_00004rm7

The crystal structure of acyl-COA dehydrogenase from Slackia heliotrinireducens DSM 20476

PDB DOI: https://doi.org/10.2210/pdb4RM7/pdb

Classification: OXIDOREDUCTASE
Organism(s): Slackia heliotrinireducens DSM 20476
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-10-20 Released: 2014-12-24
Deposition Author(s): Wu, R., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.53 Å
R-Value Free:
0.219 (Depositor), 0.225 (DCC)
R-Value Work:
0.173 (Depositor), 0.182 (DCC)
R-Value Observed:
0.176 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4RM7

This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of acyl-COA dehydrogenase from Slackia heliotrinireducens DSM 20476

Wu, R., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecule Content

Total Structure Weight: 44.7 kDa
Atom Count: 3,019
Modeled Residue Count: 375
Deposited Residue Count: 391
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-CoA dehydrogenase	A	391	Slackia heliotrinireducens DSM 20476	Mutation(s): 0 Gene Names: Shel_09270 EC: 1.3.8.1
UniProt
Find proteins for C7N4Y3 (Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1)) Explore C7N4Y3 Go to UniProtKB: C7N4Y3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C7N4Y3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.53 Å
R-Value Free: 0.219 (Depositor), 0.225 (DCC)
R-Value Work: 0.173 (Depositor), 0.182 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 137.056	α = 90
b = 137.056	β = 90
c = 130.272	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
MLPHARE	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-12-24

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2014-12-24
Type: Initial release
Version 1.1: 2018-01-24
Changes: Database references
Version 1.2: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.