4RHW

Crystal structure of Apaf-1 CARD and caspase-9 CARD complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Molecular determinants of caspase-9 activation by the Apaf-1 apoptosome.

Hu, Q.Wu, D.Chen, W.Yan, Z.Yan, C.He, T.Liang, Q.Shi, Y.

(2014) Proc. Natl. Acad. Sci. U.S.A. 111: 16254-16261


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Apoptotic protease-activating factor 1
A, B, C, D
97Homo sapiensMutation(s): 0 
Gene Names: APAF1 (KIAA0413)
Find proteins for O14727 (Homo sapiens)
Go to Gene View: APAF1
Go to UniProtKB:  O14727
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Caspase-9
E, F
108Homo sapiensMutation(s): 0 
Gene Names: CASP9 (MCH6)
EC: 3.4.22.62
Find proteins for P55211 (Homo sapiens)
Go to Gene View: CASP9
Go to UniProtKB:  P55211
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
B, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.210 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 64.531α = 90.00
b = 92.520β = 109.12
c = 68.031γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
CrystalCleardata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-10-15
    Type: Initial release
  • Version 1.1: 2018-10-17
    Type: Data collection, Database references