4RHV

THE USE OF MOLECULAR-REPLACEMENT PHASES FOR THE REFINEMENT OF THE HUMAN RHINOVIRUS 14 STRUCTURE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The use of molecular-replacement phases for the refinement of the human rhinovirus 14 structure.

Arnold, E.Rossmann, M.G.

(1988) Acta Crystallogr.,Sect.A 44: 270-282


  • PubMed Abstract: 
  • The structure of human rhinovirus 14 has been refined, by the method of restrained least squares, to an R factor of 0.16 for various random samples between 6 and 3 A resolution with F greater than 3 sigma (F). As a first step the non-crystallographic ...

    The structure of human rhinovirus 14 has been refined, by the method of restrained least squares, to an R factor of 0.16 for various random samples between 6 and 3 A resolution with F greater than 3 sigma (F). As a first step the non-crystallographic symmetry parameters were optimized using the initial atomic model in a rigid-body refinement procedure. Phase determination by the molecular-replacement phase extension and refinement procedure was continued to 2.94 A resolution, employing the improved non-crystallographic symmetry operators. The resultant structure-factor phases and weights, together with the measured amplitudes, constituted the X-ray observations used in the restrained refinement. The Hendrickson-Konnert program system [Konnert & Hendrickson (1980). Acta Cryst. A36, 344-350] was modified to incorporate non-crystallographic symmetry constrains and structure-factor phases as observations. The non-bonded contacts between subunits related by non-crystallographic symmetry were also restrained.


    Related Citations: 
    • Analysis of the Structure of Human Rhinovirus 14 Refined at a Resolution of 3.0 Angstroms
      Arnold, E.,Rossmann, M.G.
      () TO BE PUBLISHED --: --
    • Picornaviruses of Two Different Genera Have Similar Structures
      Luo, M.,Arnold, E.,Erickson, J.W.,Rossmann, M.G.,Boege, U.,Scraba, D.G.
      (1984) J.Mol.Biol. 180: 703
    • Virion Orientation in Cubic Crystals of the Human Common Cold Virus Hrv14
      Arnold, E.,Erickson, J.W.,Fout, G.S.,Frankenberger, E.A.,Hecht, H.-J.,Luo, M.,Rossmann, M.G.,Rueckert, R.R.
      (1984) J.Mol.Biol. 177: 417
    • The Structure of a Human Common Cold Virus (Rhinovirus 14) and its Evolutionary Relations to Other Viruses
      Rossmann, M.G.,Arnold, E.,Erickson, J.W.,Frankenberger, E.A.,Griffith, J.P.,Hecht, H.-J.,Johnson, J.E.,Kamer, G.,Luo, M.,Vriend, G.
      (1987) Chem.Scr. 26: 313
    • Implications of the Picornavirus Capsid Structure for Polyprotein Structure
      Arnold, E.,Luo, M.,Vriend, G.,Rossmann, M.G.,Palmenberg, A.C.,Parks, G.D.,Nicklin, M.J.H.,Wimmer, E.
      (1987) Proc.Natl.Acad.Sci.USA 84: 21
    • Structure of a Human Common Cold Virus and Functional Relationship to Other Picornaviruses
      Rossmann, M.G.,Arnold, E.,Erickson, J.W.,Frankenberger, E.A.,Griffith, J.P.,Hecht, H.-J.,Johnson, J.E.,Kamer, G.,Luo, M.,Mosser, A.G.,Rueckert, R.R.,Sherry, B.,Vriend, G.
      (1985) Nature 317: 145
    • The Structure Determination of a Common Cold Virus, Human Rhinovirus 14
      Arnold, E.,Vriend, G.,Luo, M.,Griffith, J.P.,Kamer, G.,Erickson, J.W.,Johnson, J.E.,Rossmann, M.G.
      (1987) Acta Crystallogr.,Sect.A 43: 346
    • The Site of Attachment in Human Rhinovirus 14 for Antiviral Agents that Inhibit Uncoating
      Smith, T.J.,Kremer, M.J.,Luo, M.,Vriend, G.,Arnold, E.,Kamer, G.,Rossmann, M.G.,Mckinlay, M.A.,Diana, G.D.,Otto, M.J.
      (1986) Science 233: 1286
    • Crystallization of a Common Cold Virus, Human Rhinovirus 14. (Quote)Isomorphism(Quote) with Poliovirus Crystals
      Erickson, J.W.,Frankenberger, E.A.,Rossmann, M.G.,Fout, G.S.,Medappa, K.C.,Rueckert, R.R.
      (1983) Proc.Natl.Acad.Sci.USA 80: 931


    Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, Indiania 47907.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
1
289Human rhinovirus 14EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P03303 (Human rhinovirus 14)
Go to UniProtKB:  P03303
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)
2
262Human rhinovirus 14EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P03303 (Human rhinovirus 14)
Go to UniProtKB:  P03303
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)
3
236Human rhinovirus 14EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P03303 (Human rhinovirus 14)
Go to UniProtKB:  P03303
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)
4
68Human rhinovirus 14EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P03303 (Human rhinovirus 14)
Go to UniProtKB:  P03303
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Work: 0.160 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 445.100α = 90.00
b = 445.100β = 90.00
c = 445.100γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1988-04-16
    Type: Initial release
  • Version 1.1: 2008-03-25
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance