4RHB

Crystal structure of the lipopolysaccharide assembly complex LptD-LptE from the Escherichia coli outer membrane


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.355 Å
  • R-Value Free: 0.338 
  • R-Value Work: 0.257 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis of lipopolysaccharide insertion into the bacterial outer membrane

Malojcic, G.Garner, R.A.Kahne, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
LPS-assembly protein LptD
A, C
614Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: lptD (imp, ostA, yabG)
Find proteins for P31554 (Escherichia coli (strain K12))
Go to UniProtKB:  P31554
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
LPS-assembly lipoprotein LptE
B, D
175Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: lptE (rlpB)
Find proteins for P0ADC1 (Escherichia coli (strain K12))
Go to UniProtKB:  P0ADC1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.355 Å
  • R-Value Free: 0.338 
  • R-Value Work: 0.257 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 128.040α = 90.00
b = 136.620β = 90.00
c = 108.310γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-08-26
    Type: Initial release