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Download EndnoteCrystal Structure of KTSC Domain Protein YPO2434 from Yersinia pestis
Kim, Y., Chhor, G., Endres, M., Babnigg, G., Joachimiak, A.To be published.
4RGI
Crystal Structure of KTSC Domain Protein YPO2434 from Yersinia pestis
- DOI: 10.2210/pdb4RGI/pdb
- Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION
- Organism(s): Yersinia pestis
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2014-09-30 Released: 2014-12-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.732 Å
- R-Value Free: 0.201
- R-Value Work: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Uncharacterized protein | A | 73 | Yersinia pestis | Mutation(s): 0 |
Find proteins for A0A384K990 (Yersinia pestis) Go to UniProtKB: A0A384K990 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.732 Å
- R-Value Free: 0.201
- R-Value Work: 0.174
- Space Group: C 2 2 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 38.166 | α = 90.00 |
| b = 70.908 | β = 90.00 |
| c = 55.846 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data reduction |
| DM | model building |
| HKL-3000 | data scaling |
| PHENIX | refinement |
| DM | phasing |
| SHELXS | phasing |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SBC-Collect | data collection |
| MLPHARE | phasing |
Entry History
Deposition Data
- Deposited Date: 2014-09-30
- Released Date: 2014-12-31
- Deposition Author(s): Kim, Y., Chhor, G., Endres, M., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
