4R9X | pdb_00004r9x

Crystal Structure of Putative Copper Homeostasis Protein CutC from Bacillus anthracis

• PDB DOI: https://doi.org/10.2210/pdb4R9X/pdb

• Classification: METAL TRANSPORT
• Organism(s): Bacillus anthracis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-09-08 Released: 2014-09-17 
• Deposition Author(s): Kim, Y., Zhou, M., Makowska-Grzyska, M., Grimshaw, S., Anderson, W.F., Joachimiak, A., CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 
  0.206 (Depositor), 0.199 (DCC) 
• R-Value Work: 
  0.176 (Depositor), 0.174 (DCC) 
• R-Value Observed: 
  0.177 (Depositor) 

Literature

Crystal Structure of Putative Copper Homeostasis Protein CutC from Bacillus anthracis

Kim, Y., Zhou, M., Makowska-Grzyska, M., Grimshaw, S., Anderson, W.F., Joachimiak, A., CSGID

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 52.26 kDa 
• Atom Count: 3,717 
• Modeled Residue Count: 450 
• Deposited Residue Count: 466 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Copper homeostasis protein CutC	A, B	233	Bacillus anthracis	Mutation(s): 0  Gene Names: BAS2885, BA_3100, cutC, GBAA_3100
UniProt
Find proteins for A0A6L8Q3J2 (Bacillus anthracis) Explore A0A6L8Q3J2  Go to UniProtKB:  A0A6L8Q3J2

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PGE	C [auth A]	TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N
GOL	F [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO	H [auth B]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
CA	D [auth A], E [auth A], G [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free:  0.206 (Depositor), 0.199 (DCC) 
• R-Value Work:  0.176 (Depositor), 0.174 (DCC) 
• R-Value Observed: 0.177 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m34r9x

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.335	α = 90
b = 58.335	β = 90
c = 118.967	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	data collection
HKL-3000	phasing
SHELXS	phasing
MLPHARE	phasing
DM	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-09-17 
Deposition Author(s): Kim, Y., Zhou, M., Makowska-Grzyska, M., Grimshaw, S., Anderson, W.F., Joachimiak, A., CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2014-09-17
  Type: Initial release
  
• Version 1.1: 2017-02-08
  Changes: Database references, Structure summary
• Version 1.2: 2018-01-24
  Changes: Data collection, Structure summary
• Version 1.3: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary