4R40

Crystal Structure of TolB/Pal complex from Yersinia pestis.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.496 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.170 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of TolB/Pal complex from Yersinia pestis.

Maltseva, N.Kim, Y.Osipiuk, J.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein TolB
A, C
411Yersinia pestisMutation(s): 0 
Gene Names: tolB
Find proteins for Q8ZGZ1 (Yersinia pestis)
Go to UniProtKB:  Q8ZGZ1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Peptidoglycan-associated lipoprotein
B, D
141Yersinia pestisMutation(s): 0 
Gene Names: pal (excC)
Find proteins for A0A384KAK0 (Yersinia pestis)
Go to UniProtKB:  A0A384KAK0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FMT
Query on FMT

Download SDF File 
Download CCD File 
A, B
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
B, C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.496 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.170 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 47.389α = 90.00
b = 175.252β = 89.83
c = 66.268γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-3000phasing
HKL-3000data collection
HKL-3000data scaling
HKL-3000data reduction
SBC-Collectdata collection
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-09-03
    Type: Initial release