Download Mendeley
Download EndnoteStructure of UDP-D-MAnNAc dehdrogeanse from Pyrococcus horikoshii
Pampa, K.J., Lokanath, N.K., Rai, R.V., Kunishima, N.To be published.
4R16
Structure of UDP-D-MAnNAc dehdrogeanse from Pyrococcus horikoshii
- DOI: 10.2210/pdb4R16/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
- Expression System: Escherichia coli
- Deposited: 2014-08-04 Released: 2015-10-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.251
- R-Value Work: 0.224
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| 418aa long hypothetical UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase | A, B | 418 | Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) | Mutation(s): 0 EC: 1.1.1.336 |
Find proteins for O59284 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Go to UniProtKB: O59284 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAJ Query on SAJ | A, B | (2S,3S,4R,5S,6R)-5-acetamido-6-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,4-bis(oxidanyl)oxane-2-carboxylic acid C17 H25 N3 O18 P2 DZOGQXKQLXAPND-XHUKORKBSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.251
- R-Value Work: 0.224
- Space Group: P 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 54.030 | α = 66.20 |
| b = 74.650 | β = 70.40 |
| c = 73.560 | γ = 75.20 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data reduction |
| HKL-2000 | data collection |
| CNS | refinement |
| SOLVE | phasing |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Deposited Date: 2014-08-04
- Released Date: 2015-10-14
- Deposition Author(s): Pampa, K.J., Lokanath, N.K., Rai, R.V., Kunishima, N.
