4R0L

Anti-canine CD28 antibody, 1C6, bound canine CD28


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.256 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Anti-CD28 Antibody-Initiated Cytokine Storm in Canines.

Rosinski, S.L.Storb, R.Strong, R.K.Sale, G.E.Stone, D.M.Gewe, M.M.Friend, D.J.Abrams, V.K.Randolph-Habecker, J.Graves, S.S.

(2015) Transplant Direct 1: --

  • DOI: 10.1097/TXD.0000000000000516

  • PubMed Abstract: 
  • CD28 signal blockade following T cell receptor activation is under intense investigation as a tolerance-inducing therapy for transplantation. Our goal is to produce a CD28-specific reagent as a therapy for the prevention of graft rejection and graft- ...

    CD28 signal blockade following T cell receptor activation is under intense investigation as a tolerance-inducing therapy for transplantation. Our goal is to produce a CD28-specific reagent as a therapy for the prevention of graft rejection and graft-versus-host disease in the canine model of allogeneic hematopoietic cell transplantation (HCT).


    Organizational Affiliation

    Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle Washington, 98109.,Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle Washington, 98109 ; Department of Medicine, University of Washington, Seattle, Washington, 98195.,Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle Washington, 98109.,Comparative Medicine, Fred Hutchinson Cancer Research Center, Seattle Washington, 98109.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Antibody 1C6 Heavy chain
A, H
121N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
T-cell costimulatory molecule CD28
C, D
129Canis lupus familiarisMutation(s): 0 
Gene Names: CD28
Find proteins for Q9N0N8 (Canis lupus familiaris)
Go to Gene View: CD28
Go to UniProtKB:  Q9N0N8
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Antibody 1C6 Light chain
L, B
117N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FUC
Query on FUC

Download SDF File 
Download CCD File 
C, D
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
C, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.256 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 86.783α = 90.00
b = 86.783β = 90.00
c = 205.804γ = 120.00
Software Package:
Software NamePurpose
ADSCdata collection
HKL-2000data scaling
PHASERphasing
REFMACrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-07-08
    Type: Initial release
  • Version 1.1: 2016-08-03
    Type: Source and taxonomy