4R0L

Anti-canine CD28 antibody, 1C6, bound canine CD28


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.256 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Anti-CD28 Antibody-Initiated Cytokine Storm in Canines.

Rosinski, S.L.Storb, R.Strong, R.K.Sale, G.E.Stone, D.M.Gewe, M.M.Friend, D.J.Abrams, V.K.Randolph-Habecker, J.Graves, S.S.

(2015) Transplant Direct 1: --

  • DOI: 10.1097/TXD.0000000000000516

  • PubMed Abstract: 
  • CD28 signal blockade following T cell receptor activation is under intense investigation as a tolerance-inducing therapy for transplantation. Our goal is to produce a CD28-specific reagent as a therapy for the prevention of graft rejection and graft- ...

    CD28 signal blockade following T cell receptor activation is under intense investigation as a tolerance-inducing therapy for transplantation. Our goal is to produce a CD28-specific reagent as a therapy for the prevention of graft rejection and graft-versus-host disease in the canine model of allogeneic hematopoietic cell transplantation (HCT).


    Organizational Affiliation

    Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle Washington, 98109 ; Department of Medicine, University of Washington, Seattle, Washington, 98195.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Antibody 1C6 Heavy chain
A, H
121N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
T-cell costimulatory molecule CD28
C, D
129Canis lupus familiarisMutation(s): 0 
Gene Names: CD28
Find proteins for Q9N0N8 (Canis lupus familiaris)
Go to Gene View: CD28
Go to UniProtKB:  Q9N0N8
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Antibody 1C6 Light chain
L, B
117N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FUC
Query on FUC

Download SDF File 
Download CCD File 
C, D
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
C, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.256 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 86.783α = 90.00
b = 86.783β = 90.00
c = 205.804γ = 120.00
Software Package:
Software NamePurpose
ADSCdata collection
HKL-2000data scaling
PHASERphasing
REFMACrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-07-08
    Type: Initial release
  • Version 1.1: 2016-08-03
    Type: Source and taxonomy