4QXE

Crystal structure of LGR4 fused with hagfish VLR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of LGR4 fused with hagfish VLR

Xu, J.G.Huang, C.Zhou, Y.Zhu, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Leucine-rich repeat-containing G-protein coupled receptor 4, linker, Variable lymphocyte receptor B
A
443Eptatretus burgeriHomo sapiens
This entity is chimeric
Mutation(s): 1 
Gene Names: VLRB, LGR4 (GPR48)
Find proteins for Q4G1L2 (Eptatretus burgeri)
Go to UniProtKB:  Q4G1L2
Find proteins for Q9BXB1 (Homo sapiens)
Go to Gene View: LGR4
Go to UniProtKB:  Q9BXB1
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

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A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

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Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.209 
  • Space Group: I 21 3
Unit Cell:
Length (Å)Angle (°)
a = 173.759α = 90.00
b = 173.759β = 90.00
c = 173.759γ = 90.00
Software Package:
Software NamePurpose
PHASESphasing
HKL-2000data reduction
ADSCdata collection
REFMACrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-10-22
    Type: Initial release
  • Version 1.1: 2017-06-28
    Type: Source and taxonomy