4QQN

Protein arginine methyltransferase 3 in complex with compound MTV044246


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of Potent and Selective Allosteric Inhibitors of Protein Arginine Methyltransferase 3 (PRMT3).

Kaniskan, H.U.Eram, M.S.Zhao, K.Szewczyk, M.M.Yang, X.Schmidt, K.Luo, X.Xiao, S.Dai, M.He, F.Zang, I.Lin, Y.Li, F.Dobrovetsky, E.Smil, D.Min, S.J.Lin-Jones, J.Schapira, M.Atadja, P.Li, E.Barsyte-Lovejoy, D.Arrowsmith, C.H.Brown, P.J.Liu, F.Yu, Z.Vedadi, M.Jin, J.

(2018) J. Med. Chem. 61: 1204-1217


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PRMT3 protein
A
340Homo sapiensMutation(s): 0 
Gene Names: PRMT3 (HRMT1L3)
EC: 2.1.1.-
Find proteins for O60678 (Homo sapiens)
Go to Gene View: PRMT3
Go to UniProtKB:  O60678
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
3BQ
Query on 3BQ

Download SDF File 
Download CCD File 
A
1-{2-[1-(aminomethyl)cyclohexyl]ethyl}-3-isoquinolin-6-ylurea
C19 H26 N4 O
NYAKHMNXWJGORW-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

Download SDF File 
Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.183 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 70.319α = 90.00
b = 70.319β = 90.00
c = 172.918γ = 90.00
Software Package:
Software NamePurpose
Cootmodel building
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data scaling
SCALEPACKdata scaling
HKL-3000data reduction
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2014-09-17
    Type: Initial release
  • Version 1.1: 2018-05-16
    Type: Data collection, Database references