Macromolecule Content

Total Structure Weight: 38735.90
Atom Count: 2418
Residue Count: 340
Unique protein chains: 1

4QQN

Protein arginine methyltransferase 3 in complex with compound MTV044246

DOI: 10.2210/pdb4QQN/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli

Deposited: 2014-06-27 Released: 2014-09-17
Deposition Author(s): Dong, A., Dobrovetsky, E., Tempel, W., He, H., Zhao, K., Smil, D., Landon, M., Luo, X., Chen, Z., Dai, M., Yu, Z., Lin, Y., Zhang, H., Zhao, K., Schapira, M., Brown, P.J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Vedadi, M., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.08 Å
R-Value Free: 0.212
R-Value Work: 0.183

wwPDB Validation3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Discovery of Potent and Selective Allosteric Inhibitors of Protein Arginine Methyltransferase 3 (PRMT3).

Kaniskan, H.U., Eram, M.S., Zhao, K., Szewczyk, M.M., Yang, X., Schmidt, K., Luo, X., Xiao, S., Dai, M., He, F., Zang, I., Lin, Y., Li, F., Dobrovetsky, E., Smil, D., Min, S.J., Lin-Jones, J., Schapira, M., Atadja, P., Li, E., Barsyte-Lovejoy, D., Arrowsmith, C.H., Brown, P.J., Liu, F., Yu, Z., Vedadi, M., Jin, J.

(2018) J. Med. Chem. 61: 1204-1217

PubMed: 29244490 Search on PubMed

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
PRMT3 protein	A	340	Homo sapiens	Mutation(s): 0 Gene Names: PRMT3 (HRMT1L3) EC: 2.1.1.-
Find proteins for O60678 (Homo sapiens) Go to Gene View: PRMT3 Go to UniProtKB: O60678
Protein Feature View Full Protein Feature View for O60678

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
CL Query on CL Download SDF File Download CCD File	A	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction
GOL Query on GOL Download SDF File Download CCD File	A	GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
3BQ Query on 3BQ Download SDF File Download CCD File	A	1-{2-[1-(aminomethyl)cyclohexyl]ethyl}-3-isoquinolin-6-ylurea C₁₉ H₂₆ N₄ O NYAKHMNXWJGORW-UHFFFAOYSA-N		Ligand Interaction
UNX Query on UNX Download SDF File Download CCD File	A	UNKNOWN ATOM OR ION X *		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.08 Å
R-Value Free: 0.212
R-Value Work: 0.183
Space Group: P 4₃ 2₁ 2

Unit Cell:

Length (Å)	Angle (°)
a = 70.319	α = 90.00
b = 70.319	β = 90.00
c = 172.918	γ = 90.00

Software Package:

Software Name	Purpose
Coot	model building
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data scaling
SCALEPACK	data scaling
HKL-3000	data reduction
MOLREP	phasing

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2014-06-27
Released Date: 2014-09-17
Deposition Author(s): Dong, A., Dobrovetsky, E., Tempel, W., He, H., Zhao, K., Smil, D., Landon, M., Luo, X., Chen, Z., Dai, M., Yu, Z., Lin, Y., Zhang, H., Zhao, K., Schapira, M., Brown, P.J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Vedadi, M., Structural Genomics Consortium (SGC)

Revision History

Version 1.0: 2014-09-17
Type: Initial release
Version 1.1: 2018-05-16
Type: Data collection, Database references

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.