4QPP

The Crystal Structure of Human HMT1 hnRNP methyltransferase-like protein 6 in complex with compound DS-421 (2-{4-[3-CHLORO-2-(2-METHOXYPHENYL)-1H-INDOL-5-YL]PIPERIDIN-1-YL}-N-METHYLETHANAMINE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The Crystal Structure of Human HMT1 hnRNP methyltransferase-like protein 6 in complex with compound DS-421

Zeng, H.Dong, A.Smil, D.Walker, J.R.He, H.Eram, M.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Vedadi, M.Brown, P.J.Wu, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein arginine N-methyltransferase 6
A, B, C
376Homo sapiensMutation(s): 1 
Gene Names: PRMT6 (HRMT1L6)
EC: 2.1.1.319
Find proteins for Q96LA8 (Homo sapiens)
Go to Gene View: PRMT6
Go to UniProtKB:  Q96LA8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
POLY-UNK
D, E, F
7N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
36S
Query on 36S

Download SDF File 
Download CCD File 
A, B, C
2-{4-[3-chloro-2-(2-methoxyphenyl)-1H-indol-5-yl]piperidin-1-yl}-N-methylethanamine
C23 H28 Cl N3 O
SEJLXUYMIRXRMJ-UHFFFAOYSA-N
 Ligand Interaction
SAH
Query on SAH

Download SDF File 
Download CCD File 
A, B, C
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
D, E, F
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.191 
  • Space Group: P 42 2 2
Unit Cell:
Length (Å)Angle (°)
a = 133.884α = 90.00
b = 133.884β = 90.00
c = 133.419γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
Cootmodel building
PDB_EXTRACTdata extraction
REFMACrefinement
SBC-Collectdata collection
PHASERphasing
SCALEPACKdata scaling
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-08-20
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description