4QOX

Crystal Structure of CDPK4 from Plasmodium Falciparum, PF3D7_0717500


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.748 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of CDPK4 from Plasmodium Falciparum, PF3D7_0717500

Wernimont, A.K.Walker, J.R.Hutchinson, A.Seitova, A.He, H.Loppnau, P.Neculai, M.Amani, M.Lin, Y.H.Ravichandran, M.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Hui, R.Lovato, D.V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Calcium-dependent protein kinase 4
A
537Plasmodium falciparum (isolate 3D7)Mutation(s): 0 
Gene Names: CPK4 (CDPK4)
EC: 2.7.11.1
Find proteins for Q8IBS5 (Plasmodium falciparum (isolate 3D7))
Go to UniProtKB:  Q8IBS5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DXR
Query on DXR

Download SDF File 
Download CCD File 
A
3-(3-bromobenzyl)-1-tert-butyl-1H-pyrazolo[3,4-d]pyrimidin-4-amine
C16 H18 Br N5
FTICVONBLRGQJW-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.748 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.203 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 70.289α = 90.00
b = 75.967β = 90.00
c = 92.688γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHASERphasing
DENZOdata reduction
PHENIXrefinement
HKL-3000data scaling
HKL-3000data collection
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2014-09-03
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description