4QOX

Crystal Structure of CDPK4 from Plasmodium Falciparum, PF3D7_0717500


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of CDPK4 from Plasmodium Falciparum, PF3D7_0717500

Wernimont, A.K.Walker, J.R.Hutchinson, A.Seitova, A.He, H.Loppnau, P.Neculai, M.Amani, M.Lin, Y.H.Ravichandran, M.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Hui, R.Lovato, D.V.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Calcium-dependent protein kinase 4A537Plasmodium falciparum 3D7Mutation(s): 0 
Gene Names: CDPK4CPK4PF07_0072
EC: 2.7.11.1
Find proteins for Q8IBS5 (Plasmodium falciparum (isolate 3D7))
Explore Q8IBS5 
Go to UniProtKB:  Q8IBS5
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DXR
Query on DXR

Download CCD File 
A
3-(3-bromobenzyl)-1-tert-butyl-1H-pyrazolo[3,4-d]pyrimidin-4-amine
C16 H18 Br N5
FTICVONBLRGQJW-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.206 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.289α = 90
b = 75.967β = 90
c = 92.688γ = 90
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-3000data collection
DENZOdata reduction
SCALEPACKdata scaling
HKL-3000data scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History 

  • Version 1.0: 2014-09-03
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Refinement description