4QOB | pdb_00004qob

Crystal structure of cPOP1

PDB DOI: https://doi.org/10.2210/pdb4QOB/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-06-19 Released: 2015-11-04
Deposition Author(s): Park, H.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.300 (Depositor), 0.298 (DCC)
R-Value Work:
0.247 (Depositor), 0.218 (DCC)
R-Value Observed:
0.252 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4QOB

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of cPOP1

Park, H.H.

To be published.

Macromolecule Content

Total Structure Weight: 22.39 kDa
Atom Count: 1,412
Modeled Residue Count: 174
Deposited Residue Count: 194
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyrin domain-containing protein 1	A, B	97	Homo sapiens	Mutation(s): 0 Gene Names: PYDC1, ASC2, ASCI, POP1, PYC1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WXC3 (Homo sapiens) Explore Q8WXC3 Go to UniProtKB: Q8WXC3
PHAROS: Q8WXC3 GTEx: ENSG00000169900
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8WXC3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.300 (Depositor), 0.298 (DCC)
R-Value Work: 0.247 (Depositor), 0.218 (DCC)
R-Value Observed: 0.252 (Depositor)

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.458	α = 90
b = 94.458	β = 90
c = 94.458	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
REFMAC	refinement

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2015-11-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-11-04
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.