4QNY

Crystal structure of MapK from Leishmania donovani, LDBPK_331470


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.257 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of MapK from Leishmania donovani, LDBPK_331470

Wernimont, A.K.Loppnau, P.Walker, J.R.Mangos, M.El Bakkouri, M.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Hui, R.Amani, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mitogen activated protein kinase, putative
A, B
354Leishmania donovani (strain BPK282A1)Mutation(s): 0 
Find proteins for E9BQ78 (Leishmania donovani (strain BPK282A1))
Go to UniProtKB:  E9BQ78
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
ANP
Query on ANP

Download SDF File 
Download CCD File 
A, B
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.257 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.234 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 56.203α = 90.00
b = 86.063β = 97.34
c = 82.066γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
PHASERphasing
SBC-Collectdata collection
XSCALEdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description