4QNQ

Crystal Structure Analysis of full-length Bcl-XL in complex with the inhibitor ABT-263


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure Analysis of full-length Bcl-XL in complex with the inhibitor ABT-263

Korste, A.Vetter, I.R.Stoll, R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bcl-2-like protein 1
A, B, C, D, E, F, G, H, I, J, K, L
240Rattus norvegicusMutation(s): 0 
Gene Names: Bcl2l1 (Bclx, Blc2l)
Find proteins for P53563 (Rattus norvegicus)
Go to UniProtKB:  P53563
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
1XJ
Query on 1XJ

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
4-(4-{[2-(4-chlorophenyl)-5,5-dimethylcyclohex-1-en-1-yl]methyl}piperazin-1-yl)-N-[(4-{[(2R)-4-(morpholin-4-yl)-1-(phenylsulfanyl)butan-2-yl]amino}-3-[(trifluoromethyl)sulfonyl]phenyl)sulfonyl]benzamide
C47 H55 Cl F3 N5 O6 S3
JLYAXFNOILIKPP-KXQOOQHDSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
1XJKi: <1 - 36 nM (97) BINDINGDB
1XJIC50: 60 nM (97) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.206 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 78.140α = 72.94
b = 85.810β = 67.42
c = 93.640γ = 69.38
Software Package:
Software NamePurpose
DA+data collection
PDB_EXTRACTdata extraction
XSCALEdata scaling
XDSdata reduction
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-10-28
    Type: Initial release
  • Version 1.1: 2017-08-23
    Type: Data collection