4QNQ

Crystal Structure Analysis of full-length Bcl-XL in complex with the inhibitor ABT-263


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure Analysis of full-length Bcl-XL in complex with the inhibitor ABT-263

Korste, A.Vetter, I.R.Stoll, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Bcl-2-like protein 1ABCDEFGHIJKL240Rattus norvegicusMutation(s): 0 
Gene Names: B2CL1_RATBcl2l1BclxBlc2l
Find proteins for P53563 (Rattus norvegicus)
Explore P53563 
Go to UniProtKB:  P53563
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
1XJ
Query on 1XJ

Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
4-(4-{[2-(4-chlorophenyl)-5,5-dimethylcyclohex-1-en-1-yl]methyl}piperazin-1-yl)-N-[(4-{[(2R)-4-(morpholin-4-yl)-1-(phenylsulfanyl)butan-2-yl]amino}-3-[(trifluoromethyl)sulfonyl]phenyl)sulfonyl]benzamide
C47 H55 Cl F3 N5 O6 S3
JLYAXFNOILIKPP-KXQOOQHDSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
1XJIC50:  60   nM  BindingDB
1XJKi:  36   nM  BindingDB
1XJIC50:  8.199999809265137   nM  BindingDB
1XJKi:  0.05999999865889549   nM  BindingDB
1XJKi:  1   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.209 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.14α = 72.94
b = 85.81β = 67.42
c = 93.64γ = 69.38
Software Package:
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
DA+data collection
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-10-28
    Type: Initial release
  • Version 1.1: 2017-08-23
    Changes: Data collection