4QNN

Crystal Structure of phospholipase A 1 from hornet(Vespa basalis) venom


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.204 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of phospholipase A 1 from hornet(Vespa basalis) venom

Chuang, C.Y.Ko, T.P.Wang, A.H.J.Hou, M.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Phospholipase A 1 from hornet(Vespa basalis) venomA, B, C, D300Vespa basalisMutation(s): 0 
EC: 3.1.1.32
UniProt
Find proteins for A0A0M3KKW3 (Vespa basalis)
Explore A0A0M3KKW3 
Go to UniProtKB:  A0A0M3KKW3
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HG
Query on HG

Download Ideal Coordinates CCD File 
BA [auth C], J [auth A], W [auth B]MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
AA [auth C] , CA [auth D] , DA [auth D] , E [auth A] , EA [auth D] , F [auth A] , G [auth A] , H [auth A] , 
AA [auth C],  CA [auth D],  DA [auth D],  E [auth A],  EA [auth D],  F [auth A],  G [auth A],  H [auth A],  I [auth A],  K [auth B],  L [auth B],  M [auth B],  N [auth B],  O [auth B],  P [auth B],  Q [auth B],  R [auth B],  S [auth B],  T [auth B],  U [auth B],  V [auth B],  X [auth C],  Y [auth C],  Z [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.204 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.276α = 107.14
b = 70.147β = 109.99
c = 81.724γ = 100.9
Software Package:
Software NamePurpose
HKL-2000data collection
REFMACrefinement
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-06-24
    Type: Initial release
  • Version 1.1: 2018-03-07
    Changes: Data collection