4QN8

The crystal structure of an effector protein VipE from Legionella pneumophila subsp. pneumophila str. Philadelphia 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.751 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The crystal structure of an effector protein VipE from Legionella pneumophila subsp. pneumophila str. Philadelphia 1

Tan, K.Xu, X.Cui, H.Liu, S.Savchenko, A.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VipE
A, B, C
155Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)Mutation(s): 0 
Gene Names: vipE
Find proteins for Q5ZRR7 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
Go to UniProtKB:  Q5ZRR7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BME
Query on BME

Download SDF File 
Download CCD File 
A, B, C
BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.751 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.190 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 77.553α = 90.00
b = 77.553β = 90.00
c = 71.997γ = 120.00
Software Package:
Software NamePurpose
SBC-Collectdata collection
SHELXDphasing
HKL-3000data scaling
WARPmodel building
HKL-3000data reduction
MLPHAREphasing
DMmodel building
PHENIXrefinement
ARPmodel building
DMphasing
HKL-3000phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-07-16
    Type: Initial release