4QKK

Crystal structure of an oligonucleotide containing 5-formylcytosine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.159 
  • R-Value Work: 0.140 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

5-Formylcytosine alters the structure of the DNA double helix.

Raiber, E.-A.Murat, P.Chirgadze, D.Y.Beraldi, D.Luisi, B.F.Balasubramanian, S.

(2014) Nat.Struct.Mol.Biol. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*TP*AP*(5FC)P*GP*(5FC)P*GP*(5FC)P*GP*TP*AP*G)-3')A12N/A
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
5FC
Query on 5FC
A
DNA LINKINGC10 H14 N3 O8 PDC
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.159 
  • R-Value Work: 0.140 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 44.393α = 90.00
b = 44.393β = 90.00
c = 46.254γ = 90.00
Software Package:
Software NamePurpose
PHENIXmodel building
PHENIXphasing
XDSdata reduction
PHENIXrefinement
GDAdata collection
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-10
    Type: Initial release