4QIV | pdb_00004qiv

Crystal structure of hexameric microcomparment shell protein from Aeromonas hydrophila

PDB DOI: https://doi.org/10.2210/pdb4QIV/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Aeromonas hydrophila subsp. hydrophila ATCC 7966
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-06-02 Released: 2015-08-12
Deposition Author(s): Pang, A.H., Sawaya, M.R., Yeates, T.O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.275 (Depositor), 0.280 (DCC)
R-Value Work:
0.221 (Depositor), 0.230 (DCC)
R-Value Observed:
0.224 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a hexameric microcomparment protein from Aeromonas hydrophila

Pang, A.H., Sawaya, M.R., Yeates, T.O.

To be published.

Macromolecule Content

Total Structure Weight: 35.33 kDa
Atom Count: 1,858
Modeled Residue Count: 258
Deposited Residue Count: 342
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacterial microcompartments family protein	A, B, C	114	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Mutation(s): 0 Gene Names: AHA_1335
UniProt
Find proteins for A0KHX4 (Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)) Explore A0KHX4 Go to UniProtKB: A0KHX4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0KHX4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.275 (Depositor), 0.280 (DCC)
R-Value Work: 0.221 (Depositor), 0.230 (DCC)
R-Value Observed: 0.224 (Depositor)

Space Group: F 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.46	α = 90
b = 115.21	β = 90
c = 122.35	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
ADSC	data collection

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2015-08-12

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-08-12
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.