4QDV

Dcps in complex with covalent ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Dcps in complex with covalent ligands targeting Tyrosines

Liu, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
m7GpppX diphosphatase
A, B, C, D
337Homo sapiensMutation(s): 0 
Gene Names: DCPS (DCS1, HINT5)
EC: 3.6.1.59
Find proteins for Q96C86 (Homo sapiens)
Go to Gene View: DCPS
Go to UniProtKB:  Q96C86
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B, C, D
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
30U
Query on 30U

Download SDF File 
Download CCD File 
A, D
4-{[(2,4-diaminoquinazolin-5-yl)oxy]methyl}benzenesulfonic acid
C15 H14 N4 O4 S
AVKNBINNLVQZGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.205 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 101.090α = 90.00
b = 105.510β = 90.00
c = 140.000γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement
AutoPROCdata scaling
JDirectordata collection
Aimlessdata scaling
BUSTERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2014-05-14 
  • Released Date: 2015-05-20 
  • Deposition Author(s): Liu, S.

Revision History 

  • Version 1.0: 2015-05-20
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description