Download MendeleyDcps in complex with covalent ligands targeting Tyrosines
Liu, S.To be published.
4QDV
Dcps in complex with covalent ligand
- DOI: 10.2210/pdb4QDV/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-05-14 Released: 2015-05-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.250
- R-Value Work: 0.205
- R-Value Observed: 0.208
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| m7GpppX diphosphatase | A, B, C, D | 337 | Homo sapiens | Mutation(s): 0 Gene Names: DCPS, DCS1, HINT5, HSPC015 EC: 3.6.1.59 |  |
Find proteins for Q96C86 (Homo sapiens) Explore Q96C86 Go to UniProtKB: Q96C86 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: Q96C86 GTEx: ENSG00000110063 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 30U Query on 30U | A, D | 4-{[(2,4-diaminoquinazolin-5-yl)oxy]methyl}benzenesulfonic acid C15 H14 N4 O4 S AVKNBINNLVQZGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| PO4 Query on PO4 | A, B, C, D | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| GOL Query on GOL | D | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.250
- R-Value Work: 0.205
- R-Value Observed: 0.208
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.09 | α = 90 |
| b = 105.51 | β = 90 |
| c = 140 | γ = 90 |
| Software Name | Purpose |
|---|---|
| JDirector | data collection |
| BUSTER | refinement |
| AutoPROC | data scaling |
| Aimless | data scaling |
| BUSTER | phasing |
Entry History
Deposition Data
- Deposited Date: 2014-05-14
- Released Date: 2015-05-20 Deposition Author(s): Liu, S.
