Download MendeleyStructure of phosphoesterase
Remus, B.S., Shuman, S.To be published.
4QAK
Crystal structure of phosphoesterase
- PDB DOI: 10.2210/pdb4QAK/pdb
- Classification: HYDROLASE
- Organism(s): Escherichia coli K-12
- Mutation(s): No
- Deposited: 2014-05-05 Released: 2014-10-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 Å
- R-Value Free: 0.229
- R-Value Work: 0.174
- R-Value Observed: 0.177
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2'-5'-RNA ligase | A, B | 177 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: thpR, ligT, yadP, b0147, JW5011 EC: 6.5.1 (PDB Primary Data), 3.1.4.58 (UniProt) |  |
UniProt | |||||
Find proteins for P37025 (Escherichia coli (strain K12)) Explore P37025 Go to UniProtKB: P37025 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P37025 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2AM Query on 2AM | F [auth B] | ADENOSINE-2'-MONOPHOSPHATE C10 H14 N5 O7 P QDFHPFSBQFLLSW-KQYNXXCUSA-N |  | Ligand Interaction | |
| GOL Query on GOL | C [auth A], D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 Å
- R-Value Free: 0.229
- R-Value Work: 0.174
- R-Value Observed: 0.177
- Space Group: P 4 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 107.688 | α = 90 |
| b = 107.688 | β = 90 |
| c = 71.657 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| PHENIX | model building |
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2014-10-22 Deposition Author(s): Remus, B.S., Shuman, S.
Revision History (Full details and data files)
- Version 1.0: 2014-10-22
Type: Initial release
