4Q58 | pdb_00004q58

Crystal structure of the plectin 1a actin-binding domain/integrin beta 4 fragment complex

PDB DOI: https://doi.org/10.2210/pdb4Q58/pdb

Classification: STRUCTURAL PROTEIN/PROTEIN BINDING
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2014-04-16 Released: 2014-07-23
Deposition Author(s): Song, J.-G., Kostan, J., Grishkovskaya, I., Djinovic-Carugo, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.00 Å
R-Value Free:
0.287 (Depositor), 0.287 (DCC)
R-Value Work:
0.224 (Depositor), 0.230 (DCC)
R-Value Observed:
0.227 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4Q58

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the plectin 1a actin-binding domain/integrin beta 4 fragment complex

Song, J.-G., Kostan, J., Grishkovskaya, I., Djinovic-Carugo, K.

To be published.

Macromolecule Content

Total Structure Weight: 96.19 kDa
Atom Count: 6,619
Modeled Residue Count: 825
Deposited Residue Count: 842
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Plectin	A, B	226	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q15149 (Homo sapiens) Explore Q15149 Go to UniProtKB: Q15149
PHAROS: Q15149 GTEx: ENSG00000178209
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q15149
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Integrin beta-4	C, D	195	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P16144 (Homo sapiens) Explore P16144 Go to UniProtKB: P16144
PHAROS: P16144 GTEx: ENSG00000132470
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P16144
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 4.00 Å
R-Value Free: 0.287 (Depositor), 0.287 (DCC)
R-Value Work: 0.224 (Depositor), 0.230 (DCC)
R-Value Observed: 0.227 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.341	α = 90
b = 96.341	β = 90
c = 208.025	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-07-23

Deposition Author(s):

Grishkovskaya, I.

Djinovic-Carugo, K.

Revision History (Full details and data files)

Version 1.0: 2014-07-23
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.