4Q58 | pdb_00004q58

Crystal structure of the plectin 1a actin-binding domain/integrin beta 4 fragment complex

PDB DOI: https://doi.org/10.2210/pdb4Q58/pdb

Classification: STRUCTURAL PROTEIN/PROTEIN BINDING
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2014-04-16 Released: 2014-07-23
Deposition Author(s): Song, J.-G., Kostan, J., Grishkovskaya, I., Djinovic-Carugo, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.00 Å
R-Value Free:
0.287 (Depositor), 0.290 (DCC)
R-Value Work:
0.224 (Depositor), 0.230 (DCC)
R-Value Observed:
0.227 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the plectin 1a actin-binding domain/integrin beta 4 fragment complex

Song, J.-G., Kostan, J., Grishkovskaya, I., Djinovic-Carugo, K.

To be published.

Macromolecule Content

Total Structure Weight: 96.19 kDa
Atom Count: 6,619
Modeled Residue Count: 825
Deposited Residue Count: 842
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Plectin	A, B	226	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q15149 (Homo sapiens) Explore Q15149 Go to UniProtKB: Q15149
PHAROS: Q15149 GTEx: ENSG00000178209
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q15149
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Integrin beta-4	C, D	195	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P16144 (Homo sapiens) Explore P16144 Go to UniProtKB: P16144
PHAROS: P16144 GTEx: ENSG00000132470
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P16144
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 4.00 Å
R-Value Free: 0.287 (Depositor), 0.290 (DCC)
R-Value Work: 0.224 (Depositor), 0.230 (DCC)
R-Value Observed: 0.227 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.341	α = 90
b = 96.341	β = 90
c = 208.025	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-07-23

Deposition Author(s):

Grishkovskaya, I.

Djinovic-Carugo, K.

Revision History (Full details and data files)

Version 1.0: 2014-07-23
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.