4Q0N

Crystal Structure of the fifth bromodomain of Human Poly-bromodomain containing protein 1 (PB1) in complex with a hydroxyphenyl-propenone ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of the fifth bromodomain of Human Poly-bromodomain containing protein 1 (PB1) in complex with a hydroxyphenyl-propenone ligand

Filippakopoulos, P.Picaud, S.Felletar, I.Martin, S.Monteiro, O.Fedorov, O.Chaikuad, A.Yue, W.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Knapp, S.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein polybromo-1
A, B, C, D, E, F, G, H
145Homo sapiensMutation(s): 0 
Gene Names: PBRM1 (BAF180, PB1)
Find proteins for Q86U86 (Homo sapiens)
Go to Gene View: PBRM1
Go to UniProtKB:  Q86U86
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
2XD
Query on 2XD

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Download CCD File 
A, B, C, D, E, F, G, H
(2E)-1-(2-hydroxyphenyl)-3-(2,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridin-6-yl)prop-2-en-1-one
C15 H15 N3 O2
JCKBNTULKLTRHY-SOFGYWHQSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A, C, D, E, F, G, H
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.176 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 42.021α = 90.00
b = 136.722β = 91.40
c = 114.413γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PDB_EXTRACTdata extraction
SCALAdata scaling
REFMACrefinement
DNAdata collection
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2014-05-07
    Type: Initial release