4PY8

Crystal structure of Fab 3.1 in complex with the 1918 influenza virus hemagglutinin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Alternative Recognition of the Conserved Stem Epitope in Influenza A Virus Hemagglutinin by a VH3-30-Encoded Heterosubtypic Antibody.

Wyrzucki, A.Dreyfus, C.Kohler, I.Steck, M.Wilson, I.A.Hangartner, L.

(2014) J.Virol. 88: 7083-7092


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemagglutinin HA1 chain
A
331Influenza A virus (strain A/Brevig Mission/1/1918 H1N1)Mutation(s): 0 
Gene Names: HA
Find proteins for Q9WFX3 (Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
Go to UniProtKB:  Q9WFX3
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Hemagglutinin HA2 chain
B
179Influenza A virus (strain A/Brevig Mission/1/1918 H1N1)Mutation(s): 0 
Gene Names: HA
Find proteins for Q9WFX3 (Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
Go to UniProtKB:  Q9WFX3
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
antibody 3.1 heavy chain
I
219N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
antibody 3.1 light chain
J
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MLI
Query on MLI

Download SDF File 
Download CCD File 
I, J
MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.193 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 135.060α = 90.00
b = 135.060β = 90.00
c = 230.201γ = 120.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
Blu-Icedata collection
PHASERphasing
HKL-2000data reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2014-03-26 
  • Released Date: 2014-05-21 
  • Deposition Author(s): Dreyfus, C.

Revision History 

  • Version 1.0: 2014-05-21
    Type: Initial release
  • Version 1.1: 2014-06-04
    Type: Database references