4PW0 | pdb_00004pw0

Alpha/beta hydrolase fold protein from Chitinophaga pinensis

PDB DOI: https://doi.org/10.2210/pdb4PW0/pdb

Classification: HYDROLASE
Organism(s): Chitinophaga pinensis DSM 2588
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-03-18 Released: 2014-04-02
Deposition Author(s): Osipiuk, J., Tesar, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.48 Å
R-Value Free:
0.133 (Depositor), 0.136 (DCC)
R-Value Work:
0.103 (Depositor), 0.110 (DCC)
R-Value Observed:
0.105 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Alpha/beta hydrolase fold protein from Chitinophaga pinensis.

Osipiuk, J., Tesar, C., Clancy, S., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 32.12 kDa
Atom Count: 2,741
Modeled Residue Count: 275
Deposited Residue Count: 283
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha/beta hydrolase fold protein	A	283	Chitinophaga pinensis DSM 2588	Mutation(s): 0 Gene Names: Cpin_2213

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain F [auth A] SDF format, chain E [auth A] SDF format, chain D [auth A] SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain G [auth A] MOL2 format, chain F [auth A] MOL2 format, chain E [auth A] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain G [auth A] mmCIF format, chain F [auth A] mmCIF format, chain E [auth A] mmCIF format, chain D [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.48 Å
R-Value Free: 0.133 (Depositor), 0.136 (DCC)
R-Value Work: 0.103 (Depositor), 0.110 (DCC)
R-Value Observed: 0.105 (Depositor)

Diffraction Data:

Space Group: P 6₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.38	α = 90
b = 110.38	β = 90
c = 59.184	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
SHELXD	phasing
MLPHARE	phasing
DM	phasing
SOLVE	phasing
RESOLVE	phasing
HKL-3000	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-04-02

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2014-04-02
Type: Initial release
Version 1.1: 2017-11-22
Changes: Refinement description
Version 1.2: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary