4PV7

Cocrystal structure of dipeptidyl-peptidase 4 with an indole scaffold inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.24 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Discovery of dipeptidyl peptidase IV (DPP4) inhibitors based on a novel indole scaffold

Guo, R.Huang, S.Cui, H.Ye, S.Zhang, Z.Xiao, P.

(2014) Chin.Chem.Lett. 25: 673-676


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dipeptidyl peptidase 4 soluble form
A, B
752Homo sapiensMutation(s): 0 
Gene Names: DPP4 (ADCP2, CD26)
EC: 3.4.14.5
Find proteins for P27487 (Homo sapiens)
Go to Gene View: DPP4
Go to UniProtKB:  P27487
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CJP
Query on CJP

Download SDF File 
Download CCD File 
A, B
1-[2-(2,4-dichlorophenyl)-1-(methylsulfonyl)-1H-indol-3-yl]methanamine
C16 H14 Cl2 N2 O2 S
MTMKFBZYRGNPDF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.24 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.223 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 79.815α = 90.00
b = 79.815β = 90.00
c = 286.756γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PHASESphasing
HKL-2000data reduction
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-03-18
    Type: Initial release