4PSI

PIH1D1/phospho-Tel2 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.241 

wwPDB Validation 3D Report Full Report



Literature

Phosphorylation-Dependent PIH1D1 Interactions Define Substrate Specificity of the R2TP Cochaperone Complex.

Horejsi, Z.Stach, L.Flower, T.G.Joshi, D.Flynn, H.Skehel, J.M.O'Reilly, N.J.Ogrodowicz, R.W.Smerdon, S.J.Boulton, S.J.

(2014) Cell Rep 7: 19-26

  • DOI: 10.1016/j.celrep.2014.03.013
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The R2TP cochaperone complex plays a critical role in the assembly of multisubunit machines, including small nucleolar ribonucleoproteins (snoRNPs), RNA polymerase II, and the mTORC1 and SMG1 kinase complexes, but the molecular basis of substrate rec ...

    The R2TP cochaperone complex plays a critical role in the assembly of multisubunit machines, including small nucleolar ribonucleoproteins (snoRNPs), RNA polymerase II, and the mTORC1 and SMG1 kinase complexes, but the molecular basis of substrate recognition remains unclear. Here, we describe a phosphopeptide binding domain (PIH-N) in the PIH1D1 subunit of the R2TP complex that preferentially binds to highly acidic phosphorylated proteins. A cocrystal structure of a PIH-N domain/TEL2 phosphopeptide complex reveals a highly specific phosphopeptide recognition mechanism in which Lys57 and 64 in PIH1D1, along with a conserved DpSDD phosphopeptide motif within TEL2, are essential and sufficient for binding. Proteomic analysis of PIH1D1 interactors identified R2TP complex substrates that are recruited by the PIH-N domain in a sequence-specific and phosphorylation-dependent manner suggestive of a common mechanism of substrate recognition. We propose that protein complexes assembled by the R2TP complex are defined by phosphorylation of a specific motif and recognition by the PIH1D1 subunit.


    Organizational Affiliation

    DNA Damage Response Laboratory, London Research Institute, Clare Hall, South Mimms EN6 3LD, UK. Electronic address: simon.boulton@cancer.org.uk.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PIH1 domain-containing protein 1A, B138Homo sapiensMutation(s): 0 
Gene Names: PIH1D1NOP17
Find proteins for Q9NWS0 (Homo sapiens)
Explore Q9NWS0 
Go to UniProtKB:  Q9NWS0
NIH Common Fund Data Resources
PHAROS  Q9NWS0
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Telomere length regulation protein TEL2 homologD, E11Homo sapiensMutation(s): 0 
Gene Names: TELO2KIAA0683
Find proteins for Q9Y4R8 (Homo sapiens)
Explore Q9Y4R8 
Go to UniProtKB:  Q9Y4R8
NIH Common Fund Data Resources
PHAROS  Q9Y4R8
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A,BL-PEPTIDE LINKINGC5 H11 N O2 SeMET
SEP
Query on SEP
D,EL-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.241 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.6α = 90
b = 81.84β = 90
c = 83.99γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-04-23
    Type: Initial release