4PMJ

Crystal structure of a putative oxidoreductase from Sinorhizobium meliloti 1021 in complex with NADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.167 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of a putative oxidoreductase from Sinorhizobiummeliloti 1021 in complex with NADP

Gasiorowska, O.A.Shabalin, I.G.Handing, K.B.Szlachta, K.Zimmerman, M.D.Hillerich, B.S.Gizzi, A.Toro, R.Bonanno, J.Seidel, R.Almo, S.C.Minor, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative oxidoreductase
A
281Rhizobium meliloti (strain 1021)EC: 1.1.1.-
Find proteins for Q92NR7 (Rhizobium meliloti (strain 1021))
Go to UniProtKB:  Q92NR7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
NAP
Query on NAP

Download SDF File 
Download CCD File 
A
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 44.324α = 90.00
b = 78.897β = 90.00
c = 79.563γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data collection
HKL-3000phasing
DMphasing
REFMACrefinement
SHELXDEphasing
HKL-3000data scaling
MLPHAREphasing
Cootmodel building
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesNIH-5U54GM094662-04

Revision History 

  • Version 1.0: 2014-06-11
    Type: Initial release
  • Version 1.1: 2015-08-26
    Type: Data collection
  • Version 1.2: 2017-09-20
    Type: Author supporting evidence, Derived calculations, Refinement description