4PJ0

Structure of T.elongatus Photosystem II, rows of dimers crystal packing


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.218 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 2.0 of the entry. See complete history


Literature

Native-like Photosystem II Superstructure at 2.44 angstrom Resolution through Detergent Extraction from the Protein Crystal.

Hellmich, J.Bommer, M.Burkhardt, A.Ibrahim, M.Kern, J.Meents, A.Muh, F.Dobbek, H.Zouni, A.

(2014) Structure 22: 1607-1615

  • DOI: 10.1016/j.str.2014.09.007
  • Primary Citation of Related Structures:  
    4PJ0

  • PubMed Abstract: 
  • Photosystem II (PSII) catalyzes a key step in photosynthesis, the oxidation of water to oxygen. Excellent structural models exist for the dimeric PSII core complex of cyanobacteria, but higher order physiological assemblies readily dissociate when solubilized from the native thylakoid membrane with detergent ...

    Photosystem II (PSII) catalyzes a key step in photosynthesis, the oxidation of water to oxygen. Excellent structural models exist for the dimeric PSII core complex of cyanobacteria, but higher order physiological assemblies readily dissociate when solubilized from the native thylakoid membrane with detergent. Here, we describe the crystallization of PSII from Thermosynechococcus elongatus with a postcrystallization treatment involving extraction of the detergent C12E8. This resulted in a transition from Type II to Type I-like membrane protein crystals and improved diffraction to 2.44 Å resolution. The obtained PSII packing in precise rows, interconnected by specific pairs of galactolipids and a loop in the PsbO subunit specific to cyanobacteria, is superimposable with previous electron microscopy images of the thylakoid membrane. The study provides a detailed model of such a superstructure and its organization of light-harvesting pigments with possible implications for the understanding of their efficient use of solar energy.


    Organizational Affiliation

    Institut für Biologie, Humboldt-Universität zu Berlin, Unter den Linden 6, 10095 Berlin, Germany. Electronic address: athina.zouni@hu-berlin.de.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem Q(B) protein 1A,
T [auth a]
344Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbA1psbA-1tlr1843
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for P0A444 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore P0A444 
Go to UniProtKB:  P0A444
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A444
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
CP47 proteinB,
U [auth b]
510Thermosynechococcus vestitusMutation(s): 0 
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DIQ1 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DIQ1 
Go to UniProtKB:  Q8DIQ1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DIQ1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II CP43 proteinC,
V [auth c]
461Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbCtlr1631
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DIF8 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DIF8 
Go to UniProtKB:  Q8DIF8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DIF8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II D2 proteinD,
W [auth d]
352Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbD1tlr0455psbD2tlr1630
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8CM25 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8CM25 
Go to UniProtKB:  Q8CM25
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8CM25
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome b559 subunit alphaE,
X [auth e]
84Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbEtsr1541
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DIP0 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DIP0 
Go to UniProtKB:  Q8DIP0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DIP0
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome b559 subunit betaF,
Y [auth f]
45Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbFtsr1542
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DIN9 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DIN9 
Go to UniProtKB:  Q8DIN9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DIN9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center protein HG [auth H],
Z [auth h]
66Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbHtsl1386
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DJ43 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DJ43 
Go to UniProtKB:  Q8DJ43
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DJ43
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center protein IH [auth I],
AA [auth i]
38Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbItsr1074
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DJZ6 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DJZ6 
Go to UniProtKB:  Q8DJZ6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DJZ6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center protein JI [auth J],
BA [auth j]
40Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbJtsr1544
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for P59087 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore P59087 
Go to UniProtKB:  P59087
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP59087
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center protein KJ [auth K],
CA [auth k]
46Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbKtsl0176
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q9F1K9 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q9F1K9 
Go to UniProtKB:  Q9F1K9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9F1K9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center protein LK [auth L],
DA [auth l]
37Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbLtsr1543
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DIN8 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DIN8 
Go to UniProtKB:  Q8DIN8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DIN8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center protein ML [auth M],
EA [auth m]
36Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbMtsl2052
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DHA7 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DHA7 
Go to UniProtKB:  Q8DHA7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DHA7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II manganese-stabilizing polypeptideM [auth O],
FA [auth o]
272Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbOtll0444
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for P0A431 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore P0A431 
Go to UniProtKB:  P0A431
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A431
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center protein TN [auth T],
GA [auth t]
32Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbTtsr1531
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DIQ0 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DIQ0 
Go to UniProtKB:  Q8DIQ0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DIQ0
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II 12 kDa extrinsic proteinO [auth U],
HA [auth u]
134Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbUtll2409
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q9F1L5 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q9F1L5 
Go to UniProtKB:  Q9F1L5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9F1L5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome c-550P [auth V],
IA [auth v]
163Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbVtll1285
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for P0A386 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore P0A386 
Go to UniProtKB:  P0A386
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A386
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center protein Ycf12Q [auth Y],
MA [auth y]
46Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: ycf12tsr1242
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DJI1 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DJI1 
Go to UniProtKB:  Q8DJI1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DJI1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center X proteinR [auth X],
JA [auth x]
41Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbXtsr2013
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q9F1R6 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q9F1R6 
Go to UniProtKB:  Q9F1R6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9F1R6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II reaction center protein ZS [auth Z],
NA [auth z]
62Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbZtsr1967
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DHJ2 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DHJ2 
Go to UniProtKB:  Q8DHJ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DHJ2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
Photosystem II protein YKA [auth R],
LA [auth r]
41Thermosynechococcus vestitus BP-1Mutation(s): 0 
Gene Names: psbYtsl0836
EC: 1.10.3.9
Membrane Entity: Yes 
UniProt
Find proteins for Q8DKM3 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
Explore Q8DKM3 
Go to UniProtKB:  Q8DKM3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8DKM3
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 16 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DGD
Query on DGD

Download Ideal Coordinates CCD File 
HH [auth h],
NG [auth c],
OG [auth c],
PD [auth H],
PG [auth c],
HH [auth h],
NG [auth c],
OG [auth c],
PD [auth H],
PG [auth c],
UC [auth C],
VC [auth C],
WC [auth C]
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
C51 H96 O15
LDQFLSUQYHBXSX-HXXRYREZSA-N
 Ligand Interaction
CLA
Query on CLA

Download Ideal Coordinates CCD File 
AF [auth b],
AG [auth c],
BF [auth b],
BG [auth c],
CF [auth b],
AF [auth b],
AG [auth c],
BF [auth b],
BG [auth c],
CF [auth b],
CG [auth c],
DD [auth D],
DF [auth b],
DG [auth c],
EB [auth B],
ED [auth D],
EF [auth b],
EG [auth c],
FB [auth B],
FC [auth C],
FD [auth D],
FF [auth b],
FG [auth c],
GB [auth B],
GC [auth C],
GF [auth b],
GG [auth c],
HB [auth B],
HC [auth C],
HF [auth b],
HG [auth c],
IB [auth B],
IC [auth C],
IF [auth b],
IG [auth c],
JB [auth B],
JC [auth C],
JF [auth b],
JG [auth c],
KB [auth B],
KC [auth C],
KF [auth b],
KG [auth c],
LB [auth B],
LC [auth C],
LF [auth b],
LG [auth c],
MB [auth B],
MC [auth C],
ME [auth a],
MF [auth b],
NB [auth B],
NC [auth C],
NE [auth a],
NF [auth b],
OB [auth B],
OC [auth C],
OE [auth a],
OF [auth b],
PB [auth B],
PC [auth C],
QB [auth B],
QC [auth C],
QE [auth a],
RB [auth B],
RC [auth C],
SB [auth B],
TA [auth A],
TB [auth B],
UA [auth A],
UG [auth d],
VA [auth A],
WG [auth d],
ZE [auth b],
ZF [auth c]
CHLOROPHYLL A
C55 H72 Mg N4 O5
ATNHDLDRLWWWCB-AENOIHSZSA-M
 Ligand Interaction
PHO
Query on PHO

Download Ideal Coordinates CCD File 
BD [auth D],
CD [auth D],
PE [auth a],
VG [auth d]
PHEOPHYTIN A
C55 H74 N4 O5
CQIKWXUXPNUNDV-RCBXBCQGSA-N
 Ligand Interaction
SQD
Query on SQD

Download Ideal Coordinates CCD File 
FH [auth f],
ND [auth F],
TD [auth L],
TE [auth a],
VD [auth L],
FH [auth f],
ND [auth F],
TD [auth L],
TE [auth a],
VD [auth L],
YA [auth A]
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
C41 H78 O12 S
RVUUQPKXGDTQPG-JUDHQOGESA-N
 Ligand Interaction
LMG
Query on LMG

Download Ideal Coordinates CCD File 
BC [auth B],
BH [auth d],
JD [auth D],
JE [auth a],
QA [auth A],
BC [auth B],
BH [auth d],
JD [auth D],
JE [auth a],
QA [auth A],
QG [auth c],
SF [auth b],
SG [auth c],
UE [auth a],
WF [auth b],
XB [auth B],
XC [auth C],
ZA [auth A],
ZC [auth C]
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
 Ligand Interaction
PL9
Query on PL9

Download Ideal Coordinates CCD File 
HD [auth D],
SE [auth a],
XA [auth A],
YG [auth d]
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
C53 H80 O2
FKUYMLZIRPABFK-UHFFFAOYSA-N
 Ligand Interaction
LHG
Query on LHG

Download Ideal Coordinates CCD File 
AB [auth A],
AH [auth d],
BB [auth A],
ID [auth D],
LD [auth E],
AB [auth A],
AH [auth d],
BB [auth A],
ID [auth D],
LD [auth E],
MH [auth l],
UD [auth L],
VE [auth a],
WE [auth a],
ZG [auth d]
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
C38 H75 O10 P
BIABMEZBCHDPBV-MPQUPPDSSA-N
 Ligand Interaction
HEC
Query on HEC

Download Ideal Coordinates CCD File 
EE [auth V],
UH [auth v]
HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
 Ligand Interaction
HEM
Query on HEM

Download Ideal Coordinates CCD File 
EH [auth e],
MD [auth E]
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
BCR
Query on BCR

Download Ideal Coordinates CCD File 
AD [auth C],
AE [auth T],
GD [auth D],
GH [auth h],
LH [auth k],
AD [auth C],
AE [auth T],
GD [auth D],
GH [auth h],
LH [auth k],
MG [auth c],
OD [auth H],
PF [auth b],
QF [auth b],
RE [auth a],
RF [auth b],
RH [auth t],
SC [auth C],
SD [auth K],
TC [auth C],
TG [auth c],
UB [auth B],
VB [auth B],
WA [auth A],
WB [auth B],
WH [auth z],
XG [auth d]
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
 Ligand Interaction
OEX
Query on OEX

Download Ideal Coordinates CCD File 
HE [auth a],
OA [auth A]
CA-MN4-O5 CLUSTER
Ca Mn4 O5
SEXWDHMBWJEXOJ-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download Ideal Coordinates CCD File 
CB [auth A],
DE [auth U],
DH [auth d],
FE [auth V],
PH [auth o],
CB [auth A],
DE [auth U],
DH [auth d],
FE [auth V],
PH [auth o],
SH [auth u],
TH [auth u],
XE [auth a],
YD [auth O],
ZD [auth O]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
BCT
Query on BCT

Download Ideal Coordinates CCD File 
DB [auth A],
YE [auth a]
BICARBONATE ION
C H O3
BVKZGUZCCUSVTD-UHFFFAOYSA-M
 Ligand Interaction
FE
Query on FE

Download Ideal Coordinates CCD File 
IE [auth a],
PA [auth A]
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
KE [auth a],
LE [auth a],
RA [auth A],
SA [auth A]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
UNL
Query on UNL

Download Ideal Coordinates CCD File 
AC [auth B],
BE [auth T],
CC [auth B],
CE [auth T],
CH [auth d],
AC [auth B],
BE [auth T],
CC [auth B],
CE [auth T],
CH [auth d],
DC [auth B],
EC [auth B],
GE [auth X],
IH [auth i],
JH [auth j],
KD [auth D],
KH [auth k],
NH [auth m],
OH [auth m],
QD [auth I],
QH [auth t],
RD [auth J],
RG [auth c],
TF [auth b],
UF [auth b],
VF [auth b],
VH [auth x],
WD [auth M],
XD [auth M],
XF [auth b],
YB [auth B],
YC [auth C],
YF [auth b],
ZB [auth B]
Unknown ligand
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.218 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.447α = 90
b = 218.889β = 90
c = 302.202γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-10-22
    Type: Initial release
  • Version 1.1: 2014-11-19
    Changes: Structure summary
  • Version 1.2: 2014-12-24
    Changes: Database references
  • Version 2.0: 2021-03-10
    Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Other, Source and taxonomy, Structure summary