4PDW

A benzonitrile analogue inhibits rhinovirus replication


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

A novel benzonitrile analogue inhibits rhinovirus replication.

Lacroix, C.Querol-Audi, J.Roche, M.Franco, D.Froeyen, M.Guerra, P.Terme, T.Vanelle, P.Verdaguer, N.Neyts, J.Leyssen, P.

(2014) J.Antimicrob.Chemother. 69: 2723-2732


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
A
289Human rhinovirus 14Mutation(s): 0 
Find proteins for P03303 (Human rhinovirus 14)
Go to UniProtKB:  P03303
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
B
262Human rhinovirus 14Mutation(s): 0 
Find proteins for P03303 (Human rhinovirus 14)
Go to UniProtKB:  P03303
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
C
236Human rhinovirus 14Mutation(s): 0 
Find proteins for P03303 (Human rhinovirus 14)
Go to UniProtKB:  P03303
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP4/VP2
D
68Rhinovirus BMutation(s): 0 
Find proteins for F5A5A0 (Rhinovirus B)
Go to UniProtKB:  F5A5A0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
2XK
Query on 2XK

Download SDF File 
Download CCD File 
A
4-[(4,5-dimethoxy-2-nitrophenyl)acetyl]benzonitrile
C17 H14 N2 O5
IDNLSCLFQWBBHS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.200 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 439.411α = 90.00
b = 439.411β = 90.00
c = 439.411γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
Cootmodel building
PHENIXmodel building
SCALAdata scaling
XDSdata reduction
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-07-02
    Type: Initial release
  • Version 1.1: 2014-09-24
    Type: Database references