4PD3

Crystal Structure of Rigor-Like Human Nonmuscle Myosin-2B


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.253 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal structure of the rigor-like human non-muscle myosin-2 motor domain.

Munnich, S.Pathan-Chhatbar, S.Manstein, D.J.

(2014) Febs Lett. 588: 4754-4760

  • DOI: 10.1016/j.febslet.2014.11.007

  • PubMed Abstract: 
  • We determined the crystal structure of the motor domain of human non-muscle myosin 2B (NM-2B) in a nucleotide-free state and at a resolution of 2.8 Å. The structure shows the motor domain with an open active site and the large cleft that divides the ...

    We determined the crystal structure of the motor domain of human non-muscle myosin 2B (NM-2B) in a nucleotide-free state and at a resolution of 2.8 Å. The structure shows the motor domain with an open active site and the large cleft that divides the 50 kDa domain in a closed state. Compared to other rigor-like myosin motor domain structures, our structure shows subtle but significant conformational changes in regions important for actin binding and mechanochemical coupling. Moreover, our crystal structure helps to rationalize the impact of myosin, heavy chain 9 (MYH9)-related disease mutations Arg709Cys and Arg709His on the kinetic and functional properties of NM-2B and of the closely related non-muscle myosin 2A (NM-2A).


    Organizational Affiliation

    Institute for Biophysical Chemistry, Hannover Medical School, Hannover, Germany.,Institute for Biophysical Chemistry, Hannover Medical School, Hannover, Germany. Electronic address: manstein.dietmar@mh-hannover.de.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nonmuscle myosin heavy chain B, Alpha-actinin A Chimera Protein
A, B
1032Homo sapiensDictyostelium discoideum
This entity is chimeric
Mutation(s): 0 
Gene Names: MYH10, abpA (actnA)
Find proteins for P35580 (Homo sapiens)
Go to Gene View: MYH10
Go to UniProtKB:  P35580
Find proteins for P05095 (Dictyostelium discoideum)
Go to UniProtKB:  P05095
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.253 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 65.850α = 90.00
b = 157.870β = 94.21
c = 143.480γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-11-12
    Type: Initial release
  • Version 1.1: 2014-12-17
    Type: Database references
  • Version 1.2: 2014-12-24
    Type: Database references
  • Version 1.3: 2015-02-04
    Type: Derived calculations
  • Version 1.4: 2018-03-07
    Type: Data collection, Database references, Derived calculations, Other, Source and taxonomy, Structure summary