4OZE

A.aolicus LpxC in complex with native product


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Mechanistic insight from the crystal structure of A.aolicus LpxC in the presence of product

Miller, M.D.Gao, N.Ross, P.Olivier, N.B.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
A, B
282Aquifex aeolicus (strain VF5)Mutation(s): 0 
Gene Names: lpxC (envA)
EC: 3.5.1.108
Find proteins for O67648 (Aquifex aeolicus (strain VF5))
Go to UniProtKB:  O67648
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
24G
Query on 24G

Download SDF File 
Download CCD File 
A, B
uridine-5'-diphosphate-3-O-(R-3-hydroxymyristoyl)-glucosamine
(2R,3R,4R,5S,6R)-3-amino-2-{[(R)-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl (3R)-3-hydroxytetradecanoate
C29 H51 N3 O18 P2
ZFPNNOXCEDQJQS-SSVOXRMNSA-N
 Ligand Interaction
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.162 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 101.332α = 90.00
b = 101.332β = 90.00
c = 123.553γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
XSCALEdata reduction
Aimlessdata scaling
BUSTERrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2014-02-15 
  • Released Date: 2014-08-13 
  • Deposition Author(s): Olivier, N.B.

Revision History 

  • Version 1.0: 2014-08-13
    Type: Initial release
  • Version 1.1: 2015-02-04
    Type: Derived calculations