Download MendeleyMechanistic insight from the crystal structure of A.aolicus LpxC in the presence of product
Miller, M.D., Gao, N., Ross, P., Olivier, N.B.To be published.
4OZE
A.aolicus LpxC in complex with native product
- PDB DOI: https://doi.org/10.2210/pdb4OZE/pdb
- Classification: HYDROLASE
- Organism(s): Aquifex aeolicus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-02-15 Released: 2014-08-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.61 Å
- R-Value Free: 0.185
- R-Value Work: 0.162
- R-Value Observed: 0.163
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 282 | Aquifex aeolicus | Mutation(s): 0 Gene Names: lpxC, envA, aq_1772 EC: 3.5.1 |  | |
UniProt | |||||
Find proteins for O67648 (Aquifex aeolicus (strain VF5)) Explore O67648 Go to UniProtKB: O67648 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O67648 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 24G Query on 24G | H [auth A], M [auth B] | uridine-5'-diphosphate-3-O-(R-3-hydroxymyristoyl)-glucosamine C29 H51 N3 O18 P2 ZFPNNOXCEDQJQS-SSVOXRMNSA-N |  | ||
| ZN Query on ZN | C [auth A] D [auth A] E [auth A] F [auth A] I [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CL Query on CL | G [auth A], L [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.61 Å
- R-Value Free: 0.185
- R-Value Work: 0.162
- R-Value Observed: 0.163
- Space Group: P 61
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.332 | α = 90 |
| b = 101.332 | β = 90 |
| c = 123.553 | γ = 120 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2014-08-13 Deposition Author(s): Olivier, N.B.
Revision History (Full details and data files)
- Version 1.0: 2014-08-13
Type: Initial release - Version 1.1: 2015-02-04
Changes: Derived calculations - Version 1.2: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy
