4OYK

Structure of HOIP PUB domain bound to OTULIN PIM


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 

wwPDB Validation 3D Report Full Report



Literature

Molecular Basis and Regulation of OTULIN-LUBAC Interaction.

Elliott, P.R.Nielsen, S.V.Marco-Casanova, P.Fiil, B.K.Keusekotten, K.Mailand, N.Freund, S.M.Gyrd-Hansen, M.Komander, D.

(2014) Mol Cell 54: 335-348

  • DOI: 10.1016/j.molcel.2014.03.018
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The linear ubiquitin (Ub) chain assembly complex (LUBAC) generates Met1-linked "linear" Ub chains that regulate the activation of the nuclear factor κB (NFκB) transcription factor and other processes. We recently discovered OTULIN as a deubiquitinase ...

    The linear ubiquitin (Ub) chain assembly complex (LUBAC) generates Met1-linked "linear" Ub chains that regulate the activation of the nuclear factor κB (NFκB) transcription factor and other processes. We recently discovered OTULIN as a deubiquitinase that specifically cleaves Met1-linked polyUb. Now, we show that OTULIN binds via a conserved PUB-interacting motif (PIM) to the PUB domain of the LUBAC component HOIP. Crystal structures and nuclear magnetic resonance experiments reveal the molecular basis for the high-affinity interaction and explain why OTULIN binds the HOIP PUB domain specifically. Analysis of LUBAC-induced NFκB signaling suggests that OTULIN needs to be present on LUBAC in order to restrict Met1-polyUb signaling. Moreover, LUBAC-OTULIN complex formation is regulated by OTULIN phosphorylation in the PIM. Phosphorylation of OTULIN prevents HOIP binding, whereas unphosphorylated OTULIN is part of the endogenous LUBAC complex. Our work exemplifies how coordination of ubiquitin assembly and disassembly activities in protein complexes regulates individual Ub linkage types.


    Organizational Affiliation

    Medical Research Council Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK. Electronic address: dk@mrc-lmb.cam.ac.uk.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
E3 ubiquitin-protein ligase RNF31
A, B
177Homo sapiensMutation(s): 0 
Gene Names: RNF31ZIBRA
EC: 6.3.2 (PDB Primary Data), 2.3.2.31 (UniProt)
Find proteins for Q96EP0 (Homo sapiens)
Go to UniProtKB:  Q96EP0
NIH Common Fund Data Resources
PHAROS  Q96EP0
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin thioesterase otulin
C, D
19Homo sapiensMutation(s): 0 
Gene Names: OTULINFAM105B
EC: 3.4.19.12
Find proteins for Q96BN8 (Homo sapiens)
Go to UniProtKB:  Q96BN8
NIH Common Fund Data Resources
PHAROS  Q96BN8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.049α = 90
b = 64.049β = 90
c = 172.022γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-05-21
    Type: Initial release