4OVK

Crystal structure of periplasmic solute binding protein from Veillonella parvula DSM 2008


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.140 

wwPDB Validation 3D Report Full Report


This is version 1.5 of the entry. See complete history

Literature

Crystal structure of periplasmic solute binding protein from Veillonella parvula DSM 2008

Chang, C.Chhor, G.Endres, M.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Periplasmic binding protein
A
341Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3)Mutation(s): 0 
Find proteins for D1BR49 (Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3))
Go to UniProtKB:  D1BR49
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PGE
Query on PGE

Download SDF File 
Download CCD File 
A
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.140 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 53.146α = 90.00
b = 58.872β = 90.00
c = 113.751γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-12-18
    Type: Initial release
  • Version 1.1: 2013-12-25
    Type: Data collection
  • Version 1.2: 2014-01-22
    Type: Structure summary
  • Version 1.3: 2015-02-04
    Type: Derived calculations
  • Version 1.4: 2015-02-11
    Type: Source and taxonomy
  • Version 1.5: 2017-09-27
    Type: Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary