4OTS

Crystal Structure of isolated Operophtera brumata CPV18


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.704 Å
  • R-Value Free: 0.132 
  • R-Value Work: 0.100 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

In cellulo structure determination of a novel cypovirus polyhedrin.

Axford, D.Ji, X.Stuart, D.I.Sutton, G.

(2014) Acta Crystallogr.,Sect.D 70: 1435-1441

  • DOI: 10.1107/S1399004714004714
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • This work demonstrates that with the use of a microfocus synchrotron beam the structure of a novel viral polyhedrin could be successfully determined from microcrystals within cells, removing the preparatory step of sample isolation and maintaining a ...

    This work demonstrates that with the use of a microfocus synchrotron beam the structure of a novel viral polyhedrin could be successfully determined from microcrystals within cells, removing the preparatory step of sample isolation and maintaining a favourable biological environment. The data obtained are of high quality, comparable to that obtained from isolated crystals, and enabled a facile structure determination. A small but significant difference is observed between the unit-cell parameters and the mosaic spread of in cellulo and isolated crystals, suggesting that even these robust crystals are adversely affected by removal from the cell.


    Organizational Affiliation

    Diamond Light Source Ltd, Harwell Oxford, Didcot OX11 0DE, England.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polyhedrin
A
248Operophtera brumata cypovirus 18Mutation(s): 0 
Find proteins for Q30C70 (Operophtera brumata cypovirus 18)
Go to UniProtKB:  Q30C70
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download SDF File 
Download CCD File 
A
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
GTP
Query on GTP

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Download CCD File 
A
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
ACE
Query on ACE
A
NON-POLYMERC2 H4 O

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.704 Å
  • R-Value Free: 0.132 
  • R-Value Work: 0.100 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 102.794α = 90.00
b = 102.794β = 90.00
c = 102.794γ = 90.00
Software Package:
Software NamePurpose
Blenddata scaling
GDAdata collection
FastDPdata reduction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-05-14
    Type: Initial release
  • Version 1.1: 2014-09-24
    Type: Database references