4OQQ

Structure of the effector-binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of the effector-binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis.

Skerlova, J.Fabry, M.Hubalek, M.Otwinowski, Z.Rezacova, P.

(2014) Febs J. 281: 4280-4292


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Deoxyribonucleoside regulator
A, B
264Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: deoR (yxxC)
Find proteins for P39140 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P39140
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BCN
Query on BCN

Download SDF File 
Download CCD File 
A, B
BICINE
C6 H13 N O4
FSVCELGFZIQNCK-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.193 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 63.081α = 90.00
b = 63.081β = 90.00
c = 150.129γ = 120.00
Software Package:
Software NamePurpose
HKL-3000data scaling
PHASERphasing
REFMACrefinement
HKL-3000data reduction
MAR345dtbdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-06-04
    Type: Initial release
  • Version 1.1: 2014-06-18
    Type: Database references
  • Version 1.2: 2014-10-01
    Type: Database references