4OQL

Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with dF-EdU


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.178 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with dF-EdU

Pernot, L.Neef, A.B.Westermaier, Y.Perozzo, R.Luedtke, N.Scapozza, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thymidine kinase
A, B
332Human herpesvirus 1 (strain 17)Mutation(s): 0 
Gene Names: TK
EC: 2.7.1.21
Find proteins for P03176 (Human herpesvirus 1 (strain 17))
Go to UniProtKB:  P03176
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
F2U
Query on F2U

Download SDF File 
Download CCD File 
A, B
2'-deoxy-5-ethynyl-2',2'-difluorouridine
2'-deoxy-2',2'-difluoro-5-ethynyluridine
C11 H10 F2 N2 O5
JFVJRPYRLUHQTG-ZXFLCMHBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.178 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 113.385α = 90.00
b = 116.419β = 90.00
c = 108.118γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHENIXrefinement
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-08-13
    Type: Initial release