4OOV

Crystal structure of P domain from norovirus strain Farmington Hills 2004


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.171 
  • R-Value Work: 0.145 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Human noroviruses' fondness for histo-blood group antigens.

Singh, B.K.Leuthold, M.M.Hansman, G.S.

(2015) J.Virol. 89: 2024-2040


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Major capsid protein
A, B
307Norovirus Hu/GII.4/Farmington Hills/2004/USAMutation(s): 0 
Find proteins for R4I4P2 (Norovirus Hu/GII.4/Farmington Hills/2004/USA)
Go to UniProtKB:  R4I4P2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.171 
  • R-Value Work: 0.145 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 62.950α = 90.00
b = 90.120β = 90.00
c = 109.210γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
XSCALEdata scaling
PHENIXrefinement
XDSdata reduction
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-17
    Type: Initial release
  • Version 1.1: 2015-02-11
    Type: Database references