4OLS

The amidase-2 domain of LysGH15


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.161 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural and Biochemical Characterization Reveals LysGH15 as an Unprecedented "EF-Hand-Like" Calcium-Binding Phage Lysin

Gu, J.Feng, F.Feng, X.Sun, C.Lei, L.Ding, W.Niu, F.Jiao, L.Yang, M.Li, Y.Liu, X.Song, J.Cui, Z.Han, D.Du, C.Yang, Y.Ouyang, S.Liu, Z.Han, W.

(2014) Plos Pathog. 10: e1004109-e1004109


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endolysin
A, B, C, D
242Staphylococcus phage GH15Mutation(s): 0 
Gene Names: lysGH15
Find proteins for D6QY02 (Staphylococcus phage GH15)
Go to UniProtKB:  D6QY02
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

Download SDF File 
Download CCD File 
D
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.161 
  • R-Value Work: 0.158 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 135.400α = 90.00
b = 135.400β = 90.00
c = 107.077γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SHELXSphasing
HKL-2000data scaling
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-06-04
    Type: Initial release