4OJA

Structure of Hydra Cu-Zn superoxide dismutase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.277 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of a Cu-Zn Superoxide dismutase at an evolutionary crossroad.

Subhadra, D.Anupama, A.Chirag, J.Ramaswamy, S.Sai Sudha, P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Superoxide dismutase [Cu-Zn]
A
170Hydra vulgarisMutation(s): 0 
Gene Names: SOD1
EC: 1.15.1.1
Find proteins for I3V7W8 (Hydra vulgaris)
Go to Gene View: SOD1
Go to UniProtKB:  I3V7W8
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CU
Query on CU

Download SDF File 
Download CCD File 
A
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.277 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.191 
  • Space Group: P 64 2 2
Unit Cell:
Length (Å)Angle (°)
a = 70.360α = 90.00
b = 70.360β = 90.00
c = 148.960γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
SCALAdata scaling
PROCESSdata reduction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-01-28
    Type: Initial release