4OGA

Insulin in complex with Site 1 of the human insulin receptor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.264 
  • R-Value Observed: 0.265 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Protective hinge in insulin opens to enable its receptor engagement.

Menting, J.G.Yang, Y.Chan, S.J.Phillips, N.B.Smith, B.J.Whittaker, J.Wickramasinghe, N.P.Whittaker, L.J.Pandyarajan, V.Wan, Z.L.Yadav, S.P.Carroll, J.M.Strokes, N.Roberts, C.T.Ismail-Beigi, F.Milewski, W.Steiner, D.F.Chauhan, V.S.Ward, C.W.Weiss, M.A.Lawrence, M.C.

(2014) Proc Natl Acad Sci U S A 111: E3395-E3404

  • DOI: 10.1073/pnas.1412897111
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Insulin provides a classical model of a globular protein, yet how the hormone changes conformation to engage its receptor has long been enigmatic. Interest has focused on the C-terminal B-chain segment, critical for protective self-assembly in β cell ...

    Insulin provides a classical model of a globular protein, yet how the hormone changes conformation to engage its receptor has long been enigmatic. Interest has focused on the C-terminal B-chain segment, critical for protective self-assembly in β cells and receptor binding at target tissues. Insight may be obtained from truncated "microreceptors" that reconstitute the primary hormone-binding site (α-subunit domains L1 and αCT). We demonstrate that, on microreceptor binding, this segment undergoes concerted hinge-like rotation at its B20-B23 β-turn, coupling reorientation of Phe(B24) to a 60° rotation of the B25-B28 β-strand away from the hormone core to lie antiparallel to the receptor's L1-β2 sheet. Opening of this hinge enables conserved nonpolar side chains (Ile(A2), Val(A3), Val(B12), Phe(B24), and Phe(B25)) to engage the receptor. Restraining the hinge by nonstandard mutagenesis preserves native folding but blocks receptor binding, whereas its engineered opening maintains activity at the price of protein instability and nonnative aggregation. Our findings rationalize properties of clinical mutations in the insulin family and provide a previously unidentified foundation for designing therapeutic analogs. We envisage that a switch between free and receptor-bound conformations of insulin evolved as a solution to conflicting structural determinants of biosynthesis and function.


    Organizational Affiliation

    Structural Biology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia;Department of Medical Biology, University of Melbourne, Parkville, VIC 3010, Australia dfsteine@midway.uchicago.edu michael.weiss@case.edu lawrence@wehi.edu.au.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Insulin B chain
B
30Homo sapiensMutation(s): 0 
Gene Names: INS
Find proteins for P01308 (Homo sapiens)
Go to UniProtKB:  P01308
NIH Common Fund Data Resources
PHAROS  P01308

Find similar proteins by: Sequence  |  Structure

Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
monoclonal antibody fab 83-7 fragment - heavy chain
C
118Mus musculusMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.

Find similar proteins by: Sequence  |  Structure

Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
monoclonal antibody fab 83-7 fragment - light chain
D
114Mus musculusMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.

Find similar proteins by: Sequence  |  Structure

Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Insulin receptor domains L1-CR
E
317Homo sapiensMutation(s): 1 
Gene Names: INSR
EC: 2.7.10.1
Find proteins for P06213 (Homo sapiens)
Go to UniProtKB:  P06213
NIH Common Fund Data Resources
PHAROS  P06213
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
Insulin receptor alpha-CT peptide
F
16Homo sapiensMutation(s): 0 
Gene Names: INSR
EC: 2.7.10.1
Find proteins for P06213 (Homo sapiens)
Go to UniProtKB:  P06213
NIH Common Fund Data Resources
PHAROS  P06213

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Insulin A chain
A
21Homo sapiensMutation(s): 0 
Gene Names: INS
Find proteins for P01308 (Homo sapiens)
Go to UniProtKB:  P01308
NIH Common Fund Data Resources
PHAROS  P01308
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download CCD File 
E
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
BMA
Query on BMA

Download CCD File 
E
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
MAN
Query on MAN

Download CCD File 
E
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
FUC
Query on FUC

Download CCD File 
E
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.264 
  • R-Value Observed: 0.265 
  • Space Group: P 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 169.04α = 90
b = 169.04β = 90
c = 169.04γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
BUSTERrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-08-27
    Type: Initial release
  • Version 1.1: 2014-09-10
    Changes: Database references
  • Version 1.2: 2017-11-22
    Changes: Refinement description