4O0N

2.4 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma gondii.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

2.4 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma gondii.

Minasov, G.Ruan, J.Ngo, H.Shuvalova, L.Dubrovska, I.Flores, K.Shanmugam, D.Roos, D.Anderson, W.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nucleoside diphosphate kinase
A, B, C, D, E, F, G, H, I, J, K, L
171Toxoplasma gondii (strain ATCC 50861 / VEG)Mutation(s): 0 
EC: 2.7.4.6
Find proteins for B9Q287 (Toxoplasma gondii (strain ATCC 50861 / VEG))
Go to UniProtKB:  B9Q287
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 73.385α = 90.00
b = 121.591β = 90.00
c = 212.274γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
REFMACrefinement
Blu-Icedata collection
HKL-3000data reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-12-25
    Type: Initial release
  • Version 1.1: 2014-01-22
    Type: Database references, Structure summary
  • Version 1.2: 2017-11-22
    Type: Refinement description