4NY9

Crystal Structure Of the Human PXR-LBD In Complex With N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.228 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Discovery of the CCR1 antagonist, BMS-817399, for the treatment of rheumatoid arthritis.

Santella, J.B.Gardner, D.S.Duncia, J.V.Wu, H.Dhar, M.Cavallaro, C.Tebben, A.J.Carter, P.H.Barrish, J.C.Yarde, M.Briceno, S.W.Cvijic, M.E.Grafstrom, R.R.Liu, R.Patel, S.R.Watson, A.J.Yang, G.Rose, A.V.Vickery, R.D.Caceres-Cortes, J.Caporuscio, C.Camac, D.M.Khan, J.A.An, Y.Foster, W.R.Davies, P.Hynes, J.

(2014) J.Med.Chem. 57: 7550-7564

  • DOI: 10.1021/jm5003167

  • PubMed Abstract: 
  • High-affinity, functionally potent, urea-based antagonists of CCR1 have been discovered. Modulation of PXR transactivation has revealed the selective and orally bioavailable CCR1 antagonist BMS-817399 (29), which entered clinical trials for the treat ...

    High-affinity, functionally potent, urea-based antagonists of CCR1 have been discovered. Modulation of PXR transactivation has revealed the selective and orally bioavailable CCR1 antagonist BMS-817399 (29), which entered clinical trials for the treatment of rheumatoid arthritis.


    Organizational Affiliation

    Bristol Myers Squibb Company , P.O. Box 4000, Princeton, New Jersey 08543-4000, United States.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nuclear receptor subfamily 1 group I member 2
A
290Homo sapiensMutation(s): 0 
Gene Names: NR1I2 (PXR)
Find proteins for O75469 (Homo sapiens)
Go to Gene View: NR1I2
Go to UniProtKB:  O75469
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
2Q4
Query on 2Q4

Download SDF File 
Download CCD File 
A
N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide
C23 H35 Cl N2 O4
PTNKPLPRPJERNR-XXBNENTESA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.228 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 91.760α = 90.00
b = 91.760β = 90.00
c = 85.651γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
BUSTER-TNTrefinement
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-08-27
    Type: Initial release
  • Version 1.1: 2014-12-10
    Type: Database references
  • Version 1.2: 2017-11-22
    Type: Refinement description