X-ray structure of the unliganded uridine phosphorylase from Yersinia pseudotuberculosis at 1.7 A resolution
Balaev, V.V., Gabdoulkhakov, A.G., Lashkov, A.A., Mikhailov, A.M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Uridine phosphorylase | A, B | 253 | Yersinia pseudotuberculosis IP 32953 | Mutation(s): 0  Gene Names: udp, YPTB0250 EC: 2.4.2.3 | ![]() |
UniProt | |||||
Find proteins for I3NID1 (Yersinia pseudotuberculosis serotype I (strain IP32953)) Explore I3NID1  Go to UniProtKB:  I3NID1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I3NID1 | ||||
Protein Feature ViewExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PEG Query on PEG | G [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | Ligand Interaction | ||
EDO Query on EDO | D [auth A], E [auth A], F [auth A], H [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction | ||
NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 150.742 | α = 90 |
b = 150.742 | β = 90 |
c = 46.31 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
PROTEUM PLUS | data collection |
PROTEUM PLUS | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |