4NXH

2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.158 Å
  • R-Value Free: 0.148 
  • R-Value Work: 0.115 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

2'-Trifluoromethylthio-modified RNA: synthesis, X-ray structure, thermodynamic analysis, and applications

Ennifar, E.Micura, R.Kosutic, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
23S ribosomal RNA Sarcin Ricin LoopA27Escherichia coli
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
6FU
Query on 6FU
A
RNA LINKINGC10 H14 F3 N2 O8 P S

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.158 Å
  • R-Value Free: 0.148 
  • R-Value Work: 0.115 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 29.560α = 90.00
b = 29.560β = 90.00
c = 76.730γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
XDSdata scaling
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-10
    Type: Initial release