4NUR | pdb_00004nur

Crystal structure of thermostable alkylsulfatase SdsAP from Pseudomonas sp. S9

• PDB DOI: https://doi.org/10.2210/pdb4NUR/pdb

• Classification: HYDROLASE
• Organism(s): Pseudomonas sp. S9
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-12-04 Released: 2014-12-10 
• Deposition Author(s): Sun, L.F., Su, Y.T., Zhao, Y.H., Cai, Z.X., Wu, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.76 Å
• R-Value Free: 
  0.184 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.152 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.154 (Depositor) 

Literature

Crystal structure of thermostable alkylsulfatase SdsAP from Pseudomonas sp. S9

Wu, Y.K., Sun, L.F.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 141.7 kDa 
• Atom Count: 11,390 
• Modeled Residue Count: 1,266 
• Deposited Residue Count: 1,266 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PSdsA	A, B	633	Pseudomonas sp. S9	Mutation(s): 0  Gene Names: psdsA, sdsAP EC: 3.1.6.21
UniProt
Find proteins for F2WP51 (Pseudomonas sp) Explore F2WP51  Go to UniProtKB:  F2WP51

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	C [auth A], E [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG	D [auth A], F [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.76 Å
• R-Value Free:  0.184 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.152 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.154 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.78	α = 90
b = 76.656	β = 95.03
c = 103.178	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-12-10 
Deposition Author(s): Sun, L.F., Su, Y.T., Zhao, Y.H., Cai, Z.X., Wu, Y.

Revision History  

• Version 1.0: 2014-12-10
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references, Derived calculations